|
| 1 | +--- |
| 2 | +title: BioJava:Download 4.1.0 |
| 3 | +--- |
| 4 | + |
| 5 | +This page offers downloads for the <b>BioJava 4.1.0 release</b>. |
| 6 | + |
| 7 | +BioJava 4.1.0 is compatible with <b>Java 6, 7, and 8</b>. |
| 8 | + |
| 9 | +About |
| 10 | +----- |
| 11 | + |
| 12 | +*BioJava* 4.1.0 has been released and is available using Maven from |
| 13 | +Maven Central as well as manual download (see below). |
| 14 | + |
| 15 | +This release contains over |
| 16 | +[<https://github.com/biojava/biojava/compare/5131f3aaff5a5bbbf221f5f52cfe3b849a002d87>...biojava-4.1.0 |
| 17 | +240] commits from 8 authors |
| 18 | + |
| 19 | +### New Features |
| 20 | + |
| 21 | +BioJava 4.1.0 is mostly a bug fix release, however a few new features |
| 22 | +have been added. |
| 23 | + |
| 24 | +New Features: |
| 25 | + |
| 26 | +- New algorithm for multiple structure alignments |
| 27 | +- Improved visualization of structural alignments in Jmol |
| 28 | +- Now with support for ECOD classification |
| 29 | + |
| 30 | +View the <BioJava:Modules> page for a list of current modules. |
| 31 | + |
| 32 | +Maven Download |
| 33 | +-------------- |
| 34 | + |
| 35 | +BioJava 4.1.0 requires [Maven](http://maven.apache.org/) for the build |
| 36 | +process. All BioJava jar files are available via Maven Central as of |
| 37 | +this release. |
| 38 | + |
| 39 | +You can create a BioJava dependency by adding the following XML to your |
| 40 | +project pom.xml file: |
| 41 | + |
| 42 | + <dependencies> |
| 43 | + <dependency> |
| 44 | + <groupId>org.biojava</groupId> |
| 45 | + <artifactId>biojava-core</artifactId> |
| 46 | + <version>4.1.0</version> |
| 47 | + </dependency> |
| 48 | + <!-- other biojava jars as needed --> |
| 49 | + </dependencies> |
| 50 | + |
| 51 | +Manual Download |
| 52 | +--------------- |
| 53 | + |
| 54 | +.tar.gz containing all jars, source and javadocs: |
| 55 | +[biojava-4.1.0-all](http://biojava.org/download/bj4.1.0/biojava-4.1.0-all.tar.gz) |
| 56 | + |
| 57 | +| Module | Binary Jar | Source Jar | Javadoc Jar | |
| 58 | +|--------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------| |
| 59 | +| biojava-core | [biojava-core-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-core/4.1.0/biojava-core-4.1.0.jar) | [biojava-core-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-core/4.1.0/biojava-core-4.1.0-sources.jar) | [biojava-core-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-core/4.1.0/biojava-core-4.1.0-javadoc.jar) | |
| 60 | +| biojava-alignment | [biojava-alignment-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-alignment/4.1.0/biojava-alignment-4.1.0.jar) | [biojava-alignment-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-alignment/4.1.0/biojava-alignment-4.1.0-sources.jar) | [biojava-alignment-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-alignment/4.1.0/biojava-alignment-4.1.0-javadoc.jar) | |
| 61 | +| biojava-genome | [biojava-genome-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-genome/4.1.0/biojava-genome-4.1.0.jar) | [biojava-genome-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-genome/4.1.0/biojava-genome-4.1.0-sources.jar) | [biojava-genome-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-genome/4.1.0/biojava-genome-4.1.0-javadoc.jar) | |
| 62 | +| biojava-structure | [biojava-structure-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-structure/4.1.0/biojava-structure-4.1.0.jar) | [biojava-structure-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-structure/4.1.0/biojava-structure-4.1.0-sources.jar) | [biojava-structure-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-structure/4.1.0/biojava-structure-4.1.0-javadoc.jar) | |
| 63 | +| biojava-structure-gui | [biojava-structure-gui-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-structure-gui/4.1.0/biojava-structure-gui-4.1.0.jar) | [biojava-structure-gui-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-structure-gui/4.1.0/biojava-structure-gui-4.1.0-sources.jar) | [biojava-structure-gui-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-structure-gui/4.1.0/biojava-structure-gui-4.1.0-javadoc.jar) | |
| 64 | +| biojava-phylo | [biojava-phylo-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-phylo/4.1.0/biojava-phylo-4.1.0.jar) | [biojava-phylo-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-phylo/4.1.0/biojava-phylo-4.1.0-sources.jar) | [biojava-phylo-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-phylo/4.1.0/biojava-phylo-4.1.0-javadoc.jar) | |
| 65 | +| biojava-modfinder | [biojava-modfinder-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-modfinder/4.1.0/biojava-modfinder-4.1.0.jar) | [biojava-modfinder-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-modfinder/4.1.0/biojava-modfinder-4.1.0-sources.jar) | [biojava-modfinder-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-modfinder/4.1.0/biojava-modfinder-4.1.0-javadoc.jar) | |
| 66 | +| biojava-ws | [biojava-ws-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-ws/4.1.0/biojava-ws-4.1.0.jar) | [biojava-ws-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-ws/4.1.0/biojava-ws-4.1.0-sources.jar) | [biojava-ws-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-ws/4.1.0/biojava-ws-4.1.0-javadoc.jar) | |
| 67 | +| biojava-aa-prop | [biojava-aa-prop-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-aa-prop/4.1.0/biojava-aa-prop-4.1.0.jar) | [biojava-aa-prop-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-aa-prop/4.1.0/biojava-aa-prop-4.1.0-sources.jar) | [biojava-aa-prop-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-aa-prop/4.1.0/biojava-aa-prop-4.1.0-javadoc.jar) | |
| 68 | +| biojava-ontology | [biojava-ontology-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-ontology/4.1.0/biojava-ontology-4.1.0.jar) | [biojava-ontology-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-ontology/4.1.0/biojava-ontology-4.1.0-sources.jar) | [biojava-ontology-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-ontology/4.1.0/biojava-ontology-4.1.0-javadoc.jar) | |
| 69 | +| biojava-survival | [biojava-survival-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-survival/4.1.0/biojava-survival-4.1.0.jar) | [biojava-survival-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-survival/4.1.0/biojava-survival-4.1.0-sources.jar) | [biojava-survival-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-survival/4.1.0/biojava-survival-4.1.0-javadoc.jar) | |
| 70 | +| biojava-protein-disorder | [biojava-protein-disorder-4.1.0.jar](https://repo1.maven.org/maven2/org/biojava/biojava-protein-disorder/4.1.0/biojava-protein-disorder-4.1.0.jar) | [biojava-protein-disorder-4.1.0-sources.jar](https://repo1.maven.org/maven2/org/biojava/biojava-protein-disorder/4.1.0/biojava-protein-disorder-4.1.0-sources.jar) | [biojava-protein-disorder-4.1.0-javadoc.jar](https://repo1.maven.org/maven2/org/biojava/biojava-protein-disorder/4.1.0/biojava-protein-disorder-4.1.0-javadoc.jar) | |
| 71 | + |
| 72 | +Browse API docs |
| 73 | +--------------- |
| 74 | + |
| 75 | +You can also browse the documentation at [BioJava 4.1.0 |
| 76 | +api](http://www.biojava.org/docs/api4.1.0/) |
| 77 | + |
| 78 | +Release Date |
| 79 | +------------ |
| 80 | + |
| 81 | +BioJava 4.1.0 has been released on June 25th, 2015 |
| 82 | + |
| 83 | +Getting older versions |
| 84 | +---------------------- |
| 85 | + |
| 86 | +- The release of 4.0.0 can be found |
| 87 | + [here](BioJava:Download 4.0.0 "wikilink") (requires Java 1.6, 1.7, |
| 88 | + or 1.8) |
| 89 | +- The release of 3.1.0 can be found |
| 90 | + [here](BioJava:Download 3.1.0 "wikilink") (requires Java 1.6 or 1.7) |
| 91 | +- The release of 3.0.8 can be found |
| 92 | + [here](BioJava:Download 3.0.8 "wikilink") (requires Java 1.6+) |
| 93 | +- The release of 3.0.7 can be found |
| 94 | + [here](BioJava:Download 3.0.7 "wikilink") (requires Java 1.6+) |
| 95 | +- The release of 3.0.6 can be found |
| 96 | + [here](BioJava:Download 3.0.6 "wikilink") (requires Java 1.6+) |
| 97 | +- The release of 3.0.5 can be found |
| 98 | + [here](BioJava:Download 3.0.5 "wikilink") (requires Java 1.6+) |
| 99 | +- The release of 3.0.4 can be found |
| 100 | + [here](BioJava:Download 3.0.4 "wikilink") (requires Java 1.6+) |
| 101 | +- The release of 3.0.3 can be found |
| 102 | + [here](BioJava:Download 3.0.3 "wikilink") (requires Java 1.6+) |
| 103 | +- The release of 3.0.2 can be found |
| 104 | + [here](BioJava:Download 3.0.2 "wikilink") (requires Java 1.6+) |
| 105 | +- The release of 3.0.1 can be found |
| 106 | + [here](BioJava:Download 3.0.1 "wikilink") (requires Java 1.6+) |
| 107 | +- The release of 3.0 can be found |
| 108 | + [here](BioJava:Download 3.0 "wikilink") (requires Java 1.5+) |
| 109 | +- The legacy release of 1.9.1 can be found |
| 110 | + [here](BioJava:Download 1.9.1 "wikilink") (requires Java 1.5+) |
| 111 | +- The legacy release of 1.9.0 can be found |
| 112 | + [here](BioJava:Download 1.9.0 "wikilink") (requires Java 1.5+) |
| 113 | +- The legacy release of 1.8.5 can be found |
| 114 | + [here](BioJava:Download 1.8.5 "wikilink") (requires Java 1.5+) |
| 115 | +- The legacy release of 1.8.4 can be found |
| 116 | + [here](BioJava:Download 1.8.4 "wikilink") (requires Java 1.5+) |
| 117 | +- The legacy release of 1.8.2 can be found |
| 118 | + [here](BioJava:Download 1.8.2 "wikilink") (requires Java 1.5+) |
| 119 | +- The legacy release of 1.8.1 can be found |
| 120 | + [here](BioJava:Download 1.8.1 "wikilink") (requires Java 1.5+) |
| 121 | +- The legacy release of 1.7.1 can be found |
| 122 | + [here](BioJava:Download 1.7.1 "wikilink") (requires Java 1.5+) |
| 123 | +- The legacy release of 1.7 can be found |
| 124 | + [here](BioJava:Download 1.7 "wikilink") (requires Java 1.5+) |
| 125 | +- The legacy release of 1.6 can be found |
| 126 | + [here](BioJava:Download 1.6 "wikilink") (requires Java 1.5+) |
| 127 | +- The legacy release of 1.5 can be found |
| 128 | + [here](BioJava:Download 1.5 "wikilink") (requires Java 1.4.2+) |
| 129 | +- The legacy release of 1.4 can be found |
| 130 | + [here](BioJava:Download 1.4 "wikilink") |
| 131 | +- The legacy release 1.3 can be found |
| 132 | + [here](BioJava:Download 1.3 "wikilink"). |
| 133 | +- Older releases of BioJava can be found in the [download |
| 134 | + area](http://www.biojava.org/download/). |
| 135 | + |
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