Content-Length: 466123 | pFad | http://github.com/topics/pangenomics
7BAn analysis and visualization platform for 'omics data
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Federating genomes with love (and synteny derived from functional annotations)
generating hardware accelerators for pangenomic graph queries
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
Optimal sequence-to-graph alignment with recombinations
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
An accurate aligner of long reads to a variation graph, based on co-linear chaining
AMR/VF LGT focused bacterial genomics analysis workflow
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
Construct and Analyze the North American Vitis pangenome
A pipeline for construction and graphical visualization of annotated pangenome networks.
Pangenome Mutation-Annotated Networks
Pangenome Analysis in Prokaryotes Lesson
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
A nextflow pipeline to run the mummer pipelines (align genomes, call snps) and process outputs into sane formats.
A Geometric Framework for Pangenome Graph Alignment via Ricci Flow
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