SDK for GPU accelerated genome assembly and analysis
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May 3, 2024 - Cuda
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partial-order-alignment
Here are 8 public repositories matching this topic...
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
simd long-reads multiple-sequence-alignment partial-order-alignment consensus-sequences banded-dp consensus-sequence alignment-graph gfa-format
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Jul 15, 2025 - C
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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Jun 17, 2024 - C
[ICCV 2025] Enhancing Partially Relevant Video Retrieval with Hyperbolic Learning.
video-representation-learning video-retrieval partial-order-alignment cross-modal-retrieval video-text-retrieval iccv2025 hyperbolic-learning partially-relevant-video-retrieval lorentz-self-attention prvr
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Aug 2, 2025 - Python
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
tandem-repeats long-reads multiple-sequence-alignment nanopore-sequencing seed-and-chain partial-order-alignment
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Jun 17, 2024 - C
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
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Updated
Jul 20, 2023 - C
An extension to the wavefront algorithm that generalizes it to work on directed acyclic sequence graphs
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Feb 6, 2022 - C
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
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Updated
Oct 21, 2020 - C
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