The generated wealth of immune repertoire sequencing data
requires software to investigate and quantify inter- and
intra-antibody repertoire evolution to uncover how B cells evolve
during immune responses. Here, we present 'AntibodyForests', a software
to investigate and quantify inter- and intra-antibody repertoire
evolution.
| Version: |
1.0.0 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
ape, Biostrings, dplyr, graphics, grDevices, gtools, igraph, magrittr, parallel, pwalign, rlang, scales, seqinr, stats, stringdist, stringr, tidyr, utils, viridis |
| Suggests: |
alakazam, base64enc, bio3d, combinat, devtools, DT, fpc, ggplot2, ggrepel, ggsignif, htmltools, knitr, msa, phangorn, pheatmap, Peptides, Rcompadre, rmarkdown, RPANDA, swipeR |
| Published: |
2025-01-23 |
| DOI: |
10.32614/CRAN.package.AntibodyForests |
| Author: |
Daphne van Ginneken [aut, cre],
Alexander Yermanos [aut],
Valentijn Tromp [aut],
Tudor-Stefan Cotet [ctb] |
| Maintainer: |
Daphne van Ginneken <daphne.v.ginneken at gmail.com> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
AntibodyForests results |