Computer Physics Communications, Volume 184

Volume 184, Number 1, January 2013

Computational physics

• 
  Fuyuki Shimojo, Satoshi Ohmura, Weiwei Mou, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta:
  Large nonadiabatic quantum molecular dynamics simulations on parallel computers. 1-8
• 
  Weile Jia, Zongyan Cao, Long Wang, Jiyun Fu, Xuebin Chi, Weiguo Gao, Lin-Wang Wang:
  The analysis of a plane wave pseudopotential density functional theory code on a GPU machine. 9-18
• 
  Katherine Baker, Andrij Baumketner, Yuchun Lin, Shaozhong Deng, Donald Jacobs, Wei Cai:
  ICSM: An order N method for calculating electrostatic interactions added to TINKER. 19-26
• 
  Evangelos Voyiatzis:
  Mechanical properties and elastic constants of atomistic systems through the stress-fluctuation formalism. 27-33
• 
  Tarcísio Marciano da Rocha Filho:
  Solving the Vlasov equation for one-dimensional models with long range interactions on a GPU. 34-39
• 
  Yukihiro Komura, Yutaka Okabe:
  Multi-GPU-based Swendsen-Wang multi-cluster algorithm for the simulation of two-dimensional q-state Potts model. 40-44
• 
  Eliseo García, Lorena Lozano, María Jesús Algar, M. Felipe Cátedra:
  A study of the efficiency of the parallelization of a high frequency electromagnetic approach for the computation of radiation and scattering considering multiple bounces. 45-50
• 
  Changfeng Xue, Shaozhong Deng:
  Coulomb Green's function and image potential near a planar diffuse interface, revisited. 51-59
• 
  Bin Lin:
  Parametric cubic spline method for the solution of the nonlinear Schrödinger equation. 60-65
• 
  T. D. Young, Eloy Romero, José E. Román:
  Parallel finite element density functional computations exploiting grid refinement and subspace recycling. 66-72
• 
  Liang Li, Ting-Zhu Huang, Guang-Hui Cheng, Yan-Fei Jing, Zhi-Gang Ren, Hou-Biao Li:
  Solution to 3-D electromagnetic problems discretized by a hybrid FEM/MOM method. 73-78
• 
  Paolo Greppi, Elisabetta Arato:
  Efficient computation paths for the systematic analysis of sensitivities. 79-85
• 
  Dingwen Deng, Chengjian Zhang:
  A family of new fourth-order solvers for a nonlinear damped wave equation. 86-101
• 
  Yutaka Utsuno, Noritaka Shimizu, Takaharu Otsuka, Takashi Abe:
  Efficient computation of Hamiltonian matrix elements between non-orthogonal Slater determinants. 102-108
• 
  Andreas Windisch, Reinhard Alkofer, Gundolf Haase, Manfred Liebmann:
  Examining the analytic structure of Green's functions: Massive parallel complex integration using GPUs. 109-116
• 
  Takumi Doi, Michael G. Endres:
  Unified contraction algorithm for multi-baryon correlators on the lattice. 117-123
• 
  Nuno Cardoso, Paulo J. Silva, Pedro Bicudo, Orlando Oliveira:
  Landau gauge fixing on GPUs. 124-129

Computer programs in physics

• 
  Yezhi Lin, Yinping Liu, Zhibin Li:
  Symbolic computation of analytic approximate solutions for nonlinear fractional differential equations. 130-141
• 
  Gianluca Colò, Ligang Cao, Nguyen Van Giai, Luigi Capelli:
  Self-consistent RPA calculations with Skyrme-type interactions: The skyrme_rpa program. 142-161
• 
  Juan J. Galiana-Merino, Julio L. Rosa-Herranz, Sergio Rosa-Cintas, Juan J. Martinez-Espla:
  SeismicWaveTool: Continuous and discrete wavelet analysis and filtering for multichannel seismic data. 162-171
• 
  I. I. Gontchar, M. V. Chushnyakova:
  A C-code for the double folding interaction potential for reactions involving deformed target nuclei. 172-182
• 
  Alexander P. Bakulev, Vyacheslav L. Khandramai:
  FAPT: A Mathematica package for calculations in QCD Fractional Analytic Perturbation Theory. 183-193
• 
  O. Coufal:
  A method for the accurate and smooth approximation of standard thermodynamic functions. 194-200
• 
  Graham R. Dennis, Joseph J. Hope, Mattias T. Johnsson:
  XMDS2: Fast, scalable simulation of coupled stochastic partial differential equations. 201-208
• 
  Seth Quackenbush, Ryan Gavin, Ye Li, Frank Petriello:
  W physics at the LHC with FEWZ 2.1. 209-214
• 
  Roman A. Sen'kov, Mihai Horoi, Vladimir G. Zelevinsky:
  A high-performance Fortran code to calculate spin- and parity-dependent nuclear level densities. 215-221
• 
  Eric Conte, Benjamin Fuks, Guillaume Serret:
  MadAnalysis 5, a user-friendly framework for collider phenomenology. 222-256

New version announcement

• 
  Jaroslaw Adam Miszczak:
  Employing online quantum random number generators for generating truly random quantum states in Mathematica. 257-258

Volume 184, Number 2, February 2013

Feature Article

• 
  João Antônio Plascak, P. H. L. Martins:
  Probability distribution function of the order parameter: Mixing fields and universality. 259-269

Computational physics

• 
  Satrajit Adhikari, António J. C. Varandas:
  The coupled 3D wave packet approach for triatomic reactive scattering in hyperspherical coordinates. 270-283
• 
  C. Devi Sudheer, S. Krishnan, Ashok Srinivasan, P. R. C. Kent:
  Dynamic load balancing for petascale quantum Monte Carlo applications: The Alias method. 284-292
• 
  O. Sauter, S. Yu. Medvedev:
  Tokamak coordinate conventions: COCOS. 293-302
• 
  Dongling Wang, Aiguo Xiao, Xueyang Li:
  Parametric symplectic partitioned Runge-Kutta methods with energy-preserving properties for Hamiltonian systems. 303-310
• 
  Jochen Gerhard, Volker Lindenstruth, Marcus Bleicher:
  Relativistic hydrodynamics on graphic cards. 311-319
• 
  Igor V. Sokolov:
  Alternating-order interpolation in a charge-conserving scheme for particle-in-cell simulations. 320-328
• 
  Massimo Bernaschi, Mauro Bisson, Massimiliano Fatica, Simone Melchionna, Sauro Succi:
  Petaflop hydrokinetic simulations of complex flows on massive GPU clusters. 329-341
• 
  Jin-Chun Li, Ping Qian, Zhen-Feng Zhang, Ying Liu, Xiao-Jian Yuan, Jiang Shen, Nan-Xian Chen:
  Theoretical study of structure and lattice vibrations of R₃Co_11-xFe_xB₄ (R=Nd, Gd). 342-347
• 
  Hong Jiang, Ricardo I. Gómez-Abal, Xin-Zheng Li, Christian Meisenbichler, Claudia Ambrosch-Draxl, Matthias Scheffler:
  FHI-gap: A GW code based on the all-electron augmented plane wave method. 348-366
• 
  Jun Liu:
  Least square based method for obtaining one-particle spectral functions from temperature Green functions. 367-373
• 
  Scott Le Grand, Andreas W. Götz, Ross C. Walker:
  SPFP: Speed without compromise - A mixed precision model for GPU accelerated molecular dynamics simulations. 374-380
• 
  Zhi Shang:
  Performance analysis of large scale parallel CFD computing based on Code_Saturne. 381-386
• 
  Yaroslav Pavlyukh, Jamal Berakdar:
  Electron repulsion integrals for self-energy calculations. 387-395

Computer programs in physics

• 
  Sophia Borowka, Jonathon Carter, Gudrun Heinrich:
  Numerical evaluation of multi-loop integrals for arbitrary kinematics with SecDec 2.0. 396-408
• 
  Saulius Mickevicius, Darius Germanas, Ramutis Kazys Kalinauskas:
  Revised calculation of four-particle harmonic-oscillator transformation brackets matrix. 409-413
• 
  Rostislav Chudoba, Václav Sadílek, R. Rypl, Miroslav Vorechovský:
  Using Python for scientific computing: Efficient and flexible evaluation of the statistical characteristics of functions with multivariate random inputs. 414-427
• 
  Victor Zlokazov, Vladimir Utyonkov, Yury Tsyganov:
  VSHEC - A program for the automatic spectrum calibration. 428-431
• 
  Mikhail S. Litsarev:
  The DEPOSIT computer code: Calculations of electron-loss cross-sections for complex ions colliding with neutral atoms. 432-439

New version announcements

• 
  Aleksander Jablonski:
  Improved algorithm for calculating the Chandrasekhar function. 440-442
• 
  Celestino Angeli, Renzo Cimiraglia:
  Automated evaluation of matrix elements between contracted wavefunctions: A Mathematica version of the FRODO program. 443-444

Volume 184, Number 3, March 2013

Computational physics

• 
  Rio Yokota, Lorena A. Barba, Tetsu Narumi, Kenji Yasuoka:
  Petascale turbulence simulation using a highly parallel fast multipole method on GPUs. 445-455
• 
  Simon Portegies Zwart, Stephen L. W. McMillan, Arjen van Elteren, F. Inti Pelupessy, Nathan de Vries:
  Multi-physics simulations using a hierarchical interchangeable software interface. 456-468
• 
  Jorge Francés, Sergio Bleda, Cristian Neipp, Augusto Márquez, Inmaculada Pascual, Augusto Beléndez:
  Performance analysis of the FDTD method applied to holographic volume gratings: Multi-core CPU versus GPU computing. 469-479
• 
  Jing Shen, Wei E. I. Sha, Zhixiang Huang, Mingsheng Chen, Xianliang Wu:
  High-order symplectic FDTD scheme for solving a time-dependent Schrödinger equation. 480-492
• 
  Bor-Wen Jeng, Y.-S. Wang, Cheng-Sheng Chien:
  A two-parameter continuation algorithm for vortex pinning in rotating Bose-Einstein condensates. 493-508
• 
  Nuno Cardoso, Pedro Bicudo:
  Generating pure gauge lattice QCD configurations on GPUs with CUDA. 509-518
• 
  Martin Lüscher, Stefan Schaefer:
  Lattice QCD with open boundary conditions and twisted-mass reweighting. 519-528
• 
  Ali Shokri, Abbas Ali Shokri:
  The new class of implicit L-stable hybrid Obrechkoff method for the numerical solution of first order initial value problems. 529-531
• 
  Florian De Vuyst, Francesco Salvarani:
  GPU-accelerated numerical simulations of the Knudsen gas on time-dependent domains. 532-536
• 
  Marco D. Mazzeo:
  Fast discontinuous Galerkin lattice-Boltzmann simulations on GPUs via maximal kernel fusion. 537-549
• 
  Hossein Ebadi:
  Bound state calculation of two-component Klein-Gordon equation with Damped-Relaxation technique. 550-556
• 
  Baoming Tang, Ehsan Khatami, Marcos Rigol:
  A short introduction to numerical linked-cluster expansions. 557-564
• 
  Zohreh Asgari, S. Mohammed Hosseini:
  Numerical solution of two-dimensional sine-Gordon and MBE models using Fourier spectral and high order explicit time stepping methods. 565-572
• 
  Antonio Brunetti:
  A fast fine-grained genetic algorithm for spectrum fitting: An application to X-ray spectra. 573-578
• 
  Mohankumar Nandagopal, Ajay Rawat:
  Some comments on the evaluation of the Chandrasekhar H function. 579-581
• 
  K. Parand, J. A. Rad:
  Kansa method for the solution of a parabolic equation with an unknown spacewise-dependent coefficient subject to an extra measurement. 582-595
• 
  Hai P. Le, Jean-Luc Cambier, Lord K. Cole:
  GPU-based flow simulation with detailed chemical kinetics. 596-606
• 
  D. W. L. Sprung, M. I. Betti, W. van Dijk:
  Finite Fourier transforms computed by a modified Filon-Euler-Maclaurin method. 607-616
• 
  José M. Domínguez, Alejandro J. C. Crespo, Moncho Gómez-Gesteira:
  Optimization strategies for CPU and GPU implementations of a smoothed particle hydrodynamics method. 617-627
• 
  Edan Lerner, Gustavo Düring, Matthieu Wyart:
  Simulations of driven overdamped frictionless hard spheres. 628-637
• 
  Andreas Galonska, Paul Gibbon, Frederic Imbeaux, Yann Frauel, Bernard Guillerminet, Gabriele Manduchi, Felix Wolf:
  Parallel universal access layer: A scalable I/O library for integrated tokamak modeling. 638-646
• 
  S. J. Ahmed, J. Kivinen, B. Zaporzan, Laura Curiel, Samuel Pichardo, Oleg Rubel:
  BerryPI: A software for studying polarization of crystalline solids with WIEN2k density functional all-electron package. 647-651
• 
  Mohammad Poursina, Kurt S. Anderson:
  Canonical ensemble simulation of biopolymers using a coarse-grained articulated generalized divide-and-conquer scheme. 652-660
• 
  Roberto da Silva, Mendeli H. Vainstein, Luís C. Lamb, Sandra D. Prado:
  A simple non-Markovian computational model of the statistics of soccer leagues: Emergence and scaling effects. 661-670
• 
  Giuseppe Lanzafame:
  Implicit integrations for SPH in semi-Lagrangian approach: Application to the accretion disc modeling in a microquasar. 671-688
• 
  Chris Johnson, A. D. Kennedy:
  Numerical determination of partial spectrum of Hermitian matrices using a Lánczos method with selective reorthogonalization. 689-697
• 
  Lorenzo Basso, Alexander Belyaev, Debtosh Chowdhury, Martin Hirsch, Shaaban Khalil, Stefano Moretti, Benjamin O'Leary, Werner Porod, Florian Staub:
  Proposal for generalised supersymmetry Les Houches Accord for see-saw models and PDG numbering scheme. 698-719
• 
  Mariano Álvaro, Elena Cebrián, Manuel Carretero, Luis L. Bonilla:
  Numerical methods for kinetic equations in semiconductor superlattices. 720-731
• 
  Antonio Souto-Iglesias, Fabricio Macià, Leo M. González, Jose L. Cercos-Pita:
  On the consistency of MPS. 732-745
• 
  Enrique Comesaña, Manuel Aldegunde, Antonio J. García-Loureiro:
  Simulation of the spin polarization and the charge transport in Zener tunnel junctions based on ferromagnetic GaAs and ZnO. 746-756
• 
  Dieter Bingemann:
  Statistical identification of structural rearrangement events in molecular dynamics trajectories. 757-764
• 
  Hanping Hu, Lingfeng Liu, Nai Da Ding:
  Pseudorandom sequence generator based on the Chen chaotic system. 765-768

Computer programs in physics

• 
  P. J. J. Luukko, Eero Räsänen:
  Imaginary time propagation code for large-scale two-dimensional eigenvalue problems in magnetic fields. 769-776
• 
  Giovanni Luca Masala, Bruno Golosio, Piernicola Oliva:
  An improved Marching Cube algorithm for 3D data segmentation. 777-782
• 
  Ashton S. Reimer, Alexei F. Cheviakov:
  A Matlab-based finite-difference solver for the Poisson problem with mixed Dirichlet-Neumann boundary conditions. 783-798
• 
  Jacek Kobus:
  A finite difference Hartree-Fock program for atoms and diatomic molecules. 799-811
• 
  Marco Caliari, Stefan Rainer:
  GSGPEs: A MATLAB code for computing the ground state of systems of Gross-Pitaevskii equations. 812-823
• 
  Jan Broeckhove, Kurt Vanmechelen:
  An adaptor for C++ callbacks with C and Fortran libraries. 824-832
• 
  Yury V. Suleimanov, Joshua W. Allen, W. H. Green:
  RPMDrate: Bimolecular chemical reaction rates from ring polymer molecular dynamics. 833-840
• 
  Martin Hoefling, Helmut Grubmüller:
  In silico FRET from simulated dye dynamics. 841-852
• 
  Y. G. Chen, Jingbo Wang:
  Qcompiler: Quantum compilation with the CSD method. 853-865
• 
  Richard Marchand, David Purschke, J. Samson:
  LEOrbit: A program to calculate parameters relevant to modeling Low Earth Orbit spacecraft-plasma interaction. 866-872
• 
  David A. Bonhommeau, Marie-Pierre Gaigeot:
  MCMC² : A Monte Carlo code for multiply-charged clusters. 873-884
• 
  Carl McBride, Eva G. Noya, Carlos Vega:
  A computer program to evaluate the NVM propagator for rigid asymmetric tops for use in path integral simulations of rigid bodies. 885-890
• 
  Raoul D. Schram, Gerard T. Barkema, Rob H. Bisseling:
  SAWdoubler: A program for counting self-avoiding walks. 891-898
• 
  Debtosh Chowdhury, Raghuveer Garani, Sudhir K. Vempati:
  SuSeFLAV 1.2: Program for supersymmetric mass spectra with seesaw mechanism and rare lepton flavor violating decays. 899-918
• 
  Borut Paul Kersevan, Elzbieta Richter-Was:
  The Monte Carlo event generator AcerMC versions 2.0 to 3.8 with interfaces to PYTHIA 6.4, HERWIG 6.5 and ARIADNE 4.1. 919-985
• 
  Giuseppe Bevilacqua, Michal Czakon, M. V. Garzelli, Andreas van Hameren, Adam Kardos, Costas G. Papadopoulos, R. Pittau, Malgorzata Worek:
  HELAC-NLO. 986-997
• 
  Oliver Brein, Robert V. Harlander, Tom J. E. Zirke:
  vh@nnlo - Higgs Strahlung at hadron colliders. 998-1003
• 
  Andreas Crivellin, Janusz Rosiek, P. H. Chankowski, Athanasios Dedes, S. Jäger, Philip Tanedo:
  SUSY_FLAVOR v2: A computational tool for FCNC and CP-violating processes in the MSSM. 1004-1032
• 
  Lorenzo Botto:
  A geometric multigrid Poisson solver for domains containing solid inclusions. 1033-1044
• 
  G. F. Jefferson, J. Carminati:
  ASP: Automated symbolic computation of approximate symmetries of differential equations. 1045-1063
• 
  B. Azadegan:
  A Mathematica package for calculation of planar channeling radiation spectra of relativistic electrons channeled in a diamond-structure single crystal (quantum approach). 1064-1069

New version announcements

• 
  Xian-You Wang, Xing-Gang Wu:
  GENXICC2.1: An improved version of GENXICC for hadronic production of doubly heavy baryons. 1070-1074
• 
  Alexei Bazavov, Bernd A. Berg:
  Program package for multicanonical simulations of U(1) lattice gauge theory - Second version. 1075-1076

Volume 184, Number 4, April 2013

Computational physics

• 
  T. H. Cho, Wan-Sheng Su, T. C. Leung, Wei Ren, C. T. Chan:
  Electronic and optical properties of bundled single-walled carbon nanotubes investigated by the first-principles method. 1077-1085
• 
  Sergio Andres Galindo-Torres, Alexander Scheuermann, Ling Li, D. M. Pedroso, D. J. Williams:
  A Lattice Boltzmann model for studying transient effects during imbibition-drainage cycles in unsaturated soils. 1086-1093
• 
  Shamsul Qamar, Sidrah Ahmed:
  The space-time CE/SE method for solving one-dimensional special relativistic magnetohydrodynamics equations. 1094-1105
• 
  Lin Zhang, Jie Ouyang, Xiaohua Zhang:
  The variational multiscale element free Galerkin method for MHD flows at high Hartmann numbers. 1106-1118
• 
  Yaser Afshar, Friederike Schmid, Ahmadreza Pishevar, S. Worley:
  Exploiting seeding of random number generators for efficient domain decomposition parallelization of dissipative particle dynamics. 1119-1128
• 
  Jonathan D. Halverson, Thomas Brandes, Olaf Lenz, Axel Arnold, Stas Bevc, Vitaliy Starchenko, Kurt Kremer, Torsten Stuehn, Dirk Reith:
  ESPResSo++: A modern multiscale simulation package for soft matter systems. 1129-1149
• 
  Hong Fu, Limin Zheng, Minghui Yang:
  Accelerating modified Shepard interpolated potential energy calculations using graphics processing units. 1150-1154
• 
  Johannes Zierenberg, Martin Marenz, Wolfhard Janke:
  Scaling properties of a parallel implementation of the multicanonical algorithm. 1155-1160
• 
  Yong Zhang, Ting-Zhu Huang, Wei Shao, Sheng-Jian Lai:
  Some new strategies for RCM ordering in solving electromagnetic scattering problems. 1161-1164
• 
  Peter Wittek, Fernando M. Cucchietti:
  A second-order distributed Trotter-Suzuki solver with a hybrid CPU-GPU kernel. 1165-1171
• 
  Andriy O. Lyakhov, Artem R. Oganov, Harold T. Stokes, Qiang Zhu:
  New developments in evolutionary structure prediction algorithm USPEX. 1172-1182
• 
  Markus Hopfer, Reinhard Alkofer, Gundolf Haase:
  Solving the ghost-gluon system of Yang-Mills theory on GPUs. 1183-1190
• 
  Carlos Teijeiro, Godehard Sutmann, Guillermo L. Taboada, Juan Touriño:
  Parallel Brownian dynamics simulations with the message-passing and PGAS programming models. 1191-1202
• 
  Gábor Demeter:
  Solving the Maxwell-Bloch equations for resonant nonlinear optics using GPUs. 1203-1210
• 
  Stéphane Balac, Fabrice Mahé:
  Embedded Runge-Kutta scheme for step-size control in the interaction picture method. 1211-1219

Computer programs in physics

• 
  J. S. Lee, M. Carena, J. Ellis, Apostolos Pilaftsis, Carlos E. M. Wagner:
  CPsuperH2.3: An updated tool for phenomenology in the MSSM with explicit CP violation. 1220-1233
• 
  J. R. Johansson, Paul D. Nation, Franco Nori:
  QuTiP 2: A Python framework for the dynamics of open quantum systems. 1234-1240
• 
  Shuang Gao, Gregory D. Peterson:
  GASPRNG: GPU accelerated scalable parallel random number generator library. 1241-1249
• 
  Ronald M. Caplan:
  NLSEmagic: Nonlinear Schrödinger equation multi-dimensional Matlab-based GPU-accelerated integrators using compact high-order schemes. 1250-1271
• 
  Kyungwon Chun, Huioon Kim, Hyounggyu Kim, Kil Su Jung, Youngjoo Chung:
  GMES: A Python package for solving Maxwell's equations using the FDTD method. 1272-1279
• 
  Hartmut Hafermann, Philipp Werner, Emanuel Gull:
  Efficient implementation of the continuous-time hybridization expansion quantum impurity solver. 1280-1286
• 
  Veerle Ledoux, Marnix Van Daele:
  Automatic computation of quantum-mechanical bound states and wavefunctions. 1287-1296
• 
  Ilja Honkonen, Sebastian von Alfthan, A. Sandroos, Pekka Janhunen, Minna Palmroth:
  Parallel grid library for rapid and flexible simulation development. 1297-1309
• 
  J. M. Franco, Inmaculada Gómez:
  Some procedures for the construction of high-order exponentially fitted Runge-Kutta-Nyström methods of explicit type. 1310-1321
• 
  William K. Ridgeway, David P. Millar, James R. Williamson:
  Vectorized data acquisition and fast triple-correlation integrals for Fluorescence Triple Correlation Spectroscopy. 1322-1332
• 
  Maurizio Giannotti, Michael Wise, Aaron Mohammed:
  MESAFace, a graphical interface to analyze the MESA output. 1333-1338
• 
  Eniko J. M. Madarassy, Viktor T. Toth:
  Numerical simulation code for self-gravitating Bose-Einstein condensates. 1339-1343

New version announcements

• 
  Ioan Valeriu Grossu, D. Felea, Calin Besliu, Alexandru Jipa, Tiberiu Esanu, C. C. Bordeianu, Emil Stan:
  Hyper-Fractal Analysis: A visual tool for estimating the fractal dimension of 4D objects. 1344-1345
• 
  Ioan Valeriu Grossu, Calin Besliu, Alexandru Jipa, D. Felea, Tiberiu Esanu, Emil Stan, Cristian C. Bordeianu:
  Chaos Many-Body Engine v03: A new version of code C# for chaos analysis of relativistic many-body systems with reactions. 1346-1347

Editor's corrigendum

• 
  N. Stanley Scott:
  Editor's corrigendum to "Phonon dispersion measured directly from molecular dynamics simulations" [Comput. Phys. Comm. 182(10) (2011) 2201-2207]. 1348

Volume 184, Number 5, May 2013

Computational physics

• 
  Shamsul Qamar, Waqas Ashraf:
  Application of central schemes for solving radiation hydrodynamical models. 1349-1363
• 
  Chaofeng Hou, Ji Xu, Peng Wang, Wenlai Huang, Xiaowei Wang:
  Efficient GPU-accelerated molecular dynamics simulation of solid covalent crystals. 1364-1371
• 
  Leonardo Pacifici, Danilo Nalli, Antonio Laganà:
  Quantum reactive scattering on innovative computing platforms. 1372-1380
• 
  Rosario María López, Juan Félix San-Juan:
  an e-Science project in Astrodynamics and Celestial Mechanics fields. 1381-1386
• 
  Shyamal Bhar, Soumen Kumar Roy:
  A comparison of the performance of Wang-Landau-Transition-Matrix algorithm with Wang-Landau algorithm for the determination of the joint density of states for continuous spin models. 1387-1394
• 
  Mohammed F. Hadi, Seyed A. Esmaeili:
  CUDA Fortran acceleration for the finite-difference time-domain method. 1395-1400
• 
  Wenrui Hao, Zhenzhou Lu, Luyi Li:
  A new interpretation and validation of variance based importance measures for models with correlated inputs. 1401-1413
• 
  Zheyong Fan, Topi Siro, Ari Harju:
  Accelerated molecular dynamics force evaluation on graphics processing units for thermal conductivity calculations. 1414-1425
• 
  Carlos E. Fiore, Cláudio José DaSilva:
  Equivalence between microcanonical ensembles for lattice models. 1426-1431
• 
  Lajos Szalmás:
  Accelerated discrete velocity method for axial-symmetric gaseous flows. 1432-1438
• 
  Abhishek Chowdhury, Asit K. De, Sangita De Sarkar, A. Harindranath, Jyotirmoy Maiti, Santanu Mondal, Anwesa Sarkar:
  Exploring autocorrelations in two-flavor Wilson Lattice QCD using DD-HMC algorithm. 1439-1445

Computer programs in physics

• 
  Wenbin Yu, Maxwell Blair:
  DNAD, a simple tool for automatic differentiation of Fortran codes using dual numbers. 1446-1452
• 
  Jan Kuipers, Takahiro Ueda, J. A. M. Vermaseren, J. Vollinga:
  FORM version 4.0. 1453-1467
• 
  Piotr Homola, Ralph Engel, Agata Pysz, Henryk Wilczynski:
  Simulation of ultra-high energy photon propagation with PRESHOWER 2.0. 1468-1475

New version announcements

• 
  Ben-Hao Sa, Dai-Mei Zhou, Yu-Liang Yan, Bao-Guo Dong, Xu Cai:
  PACIAE 2.1: An updated issue of the parton and hadron cascade model PACIAE 2.0. 1476-1479
• 
  V. B. Zlokazov:
  VACTIV: A graphical dialog based program for an automatic processing of line and band spectra. 1480-1481

Volume 184, Number 6, June 2013

Computational physics

• 
  Alexander Yu. Polyakov, Taras V. Lyutyy, Sergey V. Denisov, V. V. Reva, Peter Hänggi:
  Large-scale ferrofluid simulations on graphics processing units. 1483-1489
• 
  Weihua Geng, Ferosh Jacob:
  A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver. 1490-1496
• 
  Michele Tuttafesta, Gianpiero Colonna, Giuseppe Pascazio:
  Computing unsteady compressible flows using Roe's flux-difference splitting scheme on GPUs. 1497-1510
• 
  Shanshan Wang, Luming Zhang:
  An efficient split-step compact finite difference method for cubic-quintic complex Ginzburg-Landau equations. 1511-1521
• 
  Jacob Finkenrath, Francesco Knechtli, Björn Leder:
  Fermions as global correction: The QCD case. 1522-1534
• 
  Ydalia Delgado Mercado, Christof Gattringer, Alexander Schmidt:
  Surface worm algorithm for abelian Gauge-Higgs systems on the lattice. 1535-1546
• 
  Haruhiko Kohno, Jean-Christophe Nave:
  A new method for the level set equation using a hierarchical-gradient truncation and remapping technique. 1547-1554
• 
  Y. Feng, T. Lunt, F. Sardei, X. Zha:
  Implicit coupling of impurity transport at the SOL-core interface. 1555-1561
• 
  O. Zinchenko, H. A. De Raedt, E. Detsi, P. R. Onck, J. T. M. De Hosson:
  Nanoporous gold formation by dealloying: A Metropolis Monte Carlo study. 1562-1569
• 
  Miguel Munoz Zuniga, Sergei S. Kucherenko, Nilay Shah:
  Metamodelling with independent and dependent inputs. 1570-1580

Computer programs in physics

• 
  Bahaaudin M. Raffah, Paul C. Abbott:
  Efficient computation of Wigner-Eisenbud functions. 1581-1591
• 
  M. V. Stoitsov, Nicolas Schunck, Markus Kortelainen, N. Michel, H. Nam, E. Olsen, Jason Sarich, Stefan M. Wild:
  Axially deformed solution of the Skyrme-Hartree-Fock-Bogoliubov equations using the transformed harmonic oscillator basis (II) hfbtho v2.00d: A new version of the program. 1592-1604
• 
  Robert V. Harlander, Stefan Liebler, Hendrik Mantler:
  SusHi: A program for the calculation of Higgs production in gluon fusion and bottom-quark annihilation in the Standard Model and the MSSM. 1605-1617
• 
  Silvia Bahmann, Jens Kortus:
  EVO - Evolutionary algorithm for crystal structure prediction. 1618-1625
• 
  Jun Gao, Zhihua Liang, Davison E. Soper, Hung-Liang Lai, Pavel M. Nadolsky, C.-P. Yuan:
  MEKS: A program for computation of inclusive jet cross sections at hadron colliders. 1626-1642

Volume 184, Number 7, July 2013

Computational physics

• 
  Bogdan Caruntu, Constantin Bota:
  Approximate polynomial solutions of the nonlinear Lane-Emden type equations arising in astrophysics using the squared remainder minimization method. 1643-1648
• 
  Won-Kwang Park, Taehoon Park:
  Multi-frequency based location search algorithm of small electromagnetic inhomogeneities embedded in two-layered medium. 1649-1659
• 
  Zhaopeng Zhong, Alberto Talamo, Yousry Gohar:
  Monte Carlo and deterministic computational methods for the calculation of the effective delayed neutron fraction. 1660-1665
• 
  Krzysztof Cichy, Agnieszka Kujawa-Cichy, Marcin Szyniszewski:
  Lattice Hamiltonian approach to the massless Schwinger model: Precise extraction of the mass gap. 1666-1672
• 
  Romain Garnier, André Barka, Olivier Pascal:
  Efficient periodic band diagram computation using a finite element method, Arnoldi eigensolver and sparse linear system solver. 1673-1682
• 
  Christian Ringl, Herbert M. Urbassek:
  A simple algorithm for constructing fractal aggregates with pre-determined fractal dimension. 1683-1685
• 
  Paul Van Liedekerke, Bart Smeets, Tim Odenthal, Engelbert Tijskens, Herman Ramon:
  Solving microscopic flow problems using Stokes equations in SPH. 1686-1696
• 
  Éric Germaneau, Gang Su, Qing-Rong Zheng:
  Implementation of the modified Becke-Johnson meta-GGA functional in Quantum Espresso. 1697-1700
• 
  Qingang Xiong, Bo Li, Ji Xu:
  GPU-accelerated adaptive particle splitting and merging in SPH. 1701-1707
• 
  Victor G. L. Alves, Simone Coutinho Cardoso, Ademir X. da Silva:
  Gafchromic EBT2 dosimetry via robust optimization. 1708-1716
• 
  I. M. Khan, Mohammad Poursina, Kurt S. Anderson:
  Model transitions and optimization problem in multi-flexible-body systems: Application to modeling molecular systems. 1717-1728

Computer programs in physics

• 
  Alexander Belyaev, Neil D. Christensen, Alexander Pukhov:
  CalcHEP 3.4 for collider physics within and beyond the Standard Model. 1729-1769
• 
  M. P. Ruffoni:
  The FTS atomic spectrum tool (FAST) for rapid analysis of line spectra. 1770-1776
• 
  Ondrej Certík, John E. Pask, Jirí Vackár:
  dftatom: A robust and general Schrödinger and Dirac solver for atomic structure calculations. 1777-1791
• 
  Florian Staub:
  SARAH 3.2: Dirac gauginos, UFO output, and more. 1792-1809

New version announcements

• 
  O. Coufal:
  A method for the accurate and smooth approximation of standard thermodynamic functions. 1810-1811
• 
  Ioan Valeriu Grossu, S. A. El-Shamali:
  Hyper-Fractal Analysis v04: Implementation of a fuzzy box-counting algorithm for image analysis of artistic works. 1812-1813

Volume 184, Number 8, August 2013

Computational physics

• 
  Nazim Dugan, Luigi Genovese, Stefan Goedecker:
  A customized 3D GPU Poisson solver for free boundary conditions. 1815-1820
• 
  Y. C. Ou, Yu-Huang Chiu, Jian-Ming Lu, Wu-Pe Su, Min-Fa Lin:
  Electric modulation effect on magneto-optical spectrum of monolayer graphene. 1821-1826
• 
  Nicola Varini, Davide Ceresoli, Layla Martin-Samos, Ivan Girotto, Carlo Cavazzoni:
  Enhancement of DFT-calculations at petascale: Nuclear Magnetic Resonance, Hybrid Density Functional Theory and Car-Parrinello calculations. 1827-1833
• 
  Frederick Ira Moxley III, David T. Chuss, Weizhong Dai:
  A generalized finite-difference time-domain scheme for solving nonlinear Schrödinger equations. 1834-1841
• 
  T. Makkonen, Mathias Groth, M. I. Airila, R. Dux, A. Janzer, T. Kurki-Suonio, T. Lunt, H. W. Mueller, T. Puetterich, Eleonora Viezzer:
  Synthetic Doppler spectroscopy and curvilinear camera diagnostics in the ERO code. 1842-1847
• 
  José M. Domínguez, Alejandro J. C. Crespo, Daniel Valdez-Balderas, Benedict D. Rogers, Moncho Gómez-Gesteira:
  New multi-GPU implementation for smoothed particle hydrodynamics on heterogeneous clusters. 1848-1860
• 
  Rostam Golesorkhtabar, Pasquale Pavone, Jürgen Spitaler, Peter Puschnig, Claudia Draxl:
  ElaStic: A tool for calculating second-order elastic constants from first principles. 1861-1873
• 
  Rooholah Abedian, Hojatollah Adibi, Mehdi Dehghan:
  A high-order weighted essentially non-oscillatory (WENO) finite difference scheme for nonlinear degenerate parabolic equations. 1874-1888
• 
  Fatin Sezgin, Tevfik Metin Sezgin:
  Finding the best portable congruential random number generators. 1889-1897
• 
  Hua Guo, Peter Arbenz, Benedikt Oswald:
  A large-scale nonlinear eigensolver for the analysis of dispersive nanostructures. 1898-1906
• 
  Mario Schröck, Hannes Vogt:
  Coulomb, Landau and maximally Abelian gauge fixing in lattice QCD with multi-GPUs. 1907-1919
• 
  Zelimir Marojevic, Ertan Göklü, Claus Lämmerzahl:
  Energy eigenfunctions of the 1D Gross-Pitaevskii equation. 1920-1930

Computer programs in physics

• 
  Thomas Fischbacher, Franziska Synatschke-Czerwonka:
  FlowPy - A numerical solver for functional renormalization group equations. 1931-1945
• 
  George Opletal, Timothy C. Petersen, I. K. Snook, Salvy P. Russo:
  HRMC_2.0: Hybrid Reverse Monte Carlo method with silicon, carbon and germanium potentials. 1946-1957
• 
  Ian A. Cosden, Jennifer R. Lukes:
  A hybrid atomistic-continuum model for fluid flow using LAMMPS and OpenFOAM. 1958-1965
• 
  Bo Xiao, Hao Wang, Shou-hua Zhu:
  A simple algorithm for automatic Feynman diagram generation. 1966-1972
• 
  Zhi-Wei Huang, Jueping Liu:
  NumExp: Numerical epsilon expansion of hypergeometric functions. 1973-1980
• 
  Simon Badger, Benedikt Biedermann, Peter Uwer, Valery Yundin:
  Numerical evaluation of virtual corrections to multi-jet production in massless QCD. 1981-1998
• 
  Gleb Beliakov, Douglas C. Creighton, Michael Johnstone, Tim Wilkin:
  Efficient implementation of Bailey and Borwein pseudo-random number generator based on normal numbers. 1999-2004
• 
  Akira SaiToh:
  ZKCM: A C++ library for multiprecision matrix computation with applications in quantum information. 2005-2020
• 
  F. E. Mackay, Santtu T. T. Ollila, Colin Denniston:
  Hydrodynamic forces implemented into LAMMPS through a lattice-Boltzmann fluid. 2021-2031

New version announcement

• 
  Jingjing Zheng, Rubén Meana-Pañeda, Donald G. Truhlar:
  MSTor version 2013: A new version of the computer code for the multi-structural torsional anharmonicity, now with a coupled torsional potential. 2032-2033

Volume 184, Number 9, September 2013

Computational physics

• 
  Xiangwen Lu, Jiabin Yuan, Weiwei Zhang:
  Workflow of the Grover algorithm simulation incorporating CUDA and GPGPU. 2035-2041
• 
  Matthias Bach, Volker Lindenstruth, Owe Philipsen, Christopher Pinke:
  Lattice QCD based on OpenCL. 2042-2052
• 
  Marco Brambilla, Roberto Bilato:
  An efficient interface between the solvers of Maxwell's equations and of the quasilinear kinetic equation for simulations of ion cyclotron heating in tokamak plasmas. 2053-2060
• 
  Aditya Kaushik:
  Iterative analytic approximation to nonlinear convection dominated systems. 2061-2069
• 
  Jan-Hendrik Köhne, Katharina Frantzen, Martin Schmitz, Tomasz Fuchs, Wolfgang Rhode, Dmitry Chirkin, Julia K. Becker Tjus:
  PROPOSAL: A tool for propagation of charged leptons. 2070-2090
• 
  Qing Hou, Min Li, Yulu Zhou, Jiechao Cui, Zhenguo Cui, Jun Wang:
  Molecular dynamics simulations with many-body potentials on multiple GPUs - The implementation, package and performance. 2091-2101
• 
  Kris T. Delaney, Glenn H. Fredrickson:
  Polymer field-theory simulations on graphics processing units. 2102-2110
• 
  Guang-Rui Qian, Xiao Dong, Xiang-Feng Zhou, Yongjun Tian, Artem R. Oganov, Hui-Tian Wang:
  Variable cell nudged elastic band method for studying solid-solid structural phase transitions. 2111-2118
• 
  Pavel Augustinský, Jan Kunes:
  Improved Green's function measurement for hybridization expansion quantum Monte Carlo. 2119-2126
• 
  M. Rewienski, Adam Lamecki, Michal Mrozowski:
  An extended basis inexact shift-invert Lanczos for the efficient solution of large-scale generalized eigenproblems. 2127-2135
• 
  Yinlong Zhao, Zhiliang Lin, Shijun Liao:
  An iterative HAM approach for nonlinear boundary value problems in a semi-infinite domain. 2136-2144
• 
  Mehdi Dehghan, Ahmad Nikpour:
  The solitary wave solution of coupled Klein-Gordon-Zakharov equations via two different numerical methods. 2145-2158
• 
  Yohei Miki, Daisuke Takahashi, Masao Mori:
  Highly scalable implementation of an NN-body code on a GPU cluster. 2159-2168
• 
  Harpreet Kaur, R. C. Mittal, Vinod Mishra:
  Haar wavelet approximate solutions for the generalized Lane-Emden equations arising in astrophysics. 2169-2177
• 
  Fatih Özkaynak, Sirma Yavuz:
  Security problems for a pseudorandom sequence generator based on the Chen chaotic system. 2178-2181
• 
  Minghui Wang, Wenhao Ma:
  A structure-preserving method for the quaternion LU decomposition in quaternionic quantum theory. 2182-2186

Computer programs in physics

• 
  C. Nazé, E. Gaidamauskas, Gediminas Gaigalas, Michel R. Godefroid, Per Jönsson:
  ris3: A program for relativistic isotope shift calculations. 2187-2196
• 
  Per Jönsson, Gediminas Gaigalas, Jacek Bieron, Charlotte Froese Fischer, I. P. Grant:
  New version: Grasp2K relativistic atomic structure package. 2197-2203
• 
  Jilali Mikram, Fouad Zinoun, Abderrahim El Abdllaoui:
  POINCARÉ CODE: A package of open-source implements for normalization and computer algebra reduction near equilibria of coupled ordinary differential equations. 2204-2213
• 
  Nathan Whitehorn, Jakob van Santen, Sven Lafebre:
  Penalized splines for smooth representation of high-dimensional Monte Carlo datasets. 2214-2220
• 
  Beibei Huang, Vladimir A. Baulin:
  IPEC Solver: Numerical simulation tool to study inter-polyelectrolyte complexation. 2221-2229

New version announcements

• 
  Sam J. Cipolla:
  Corrected ISICS program versions available due to a minor calculation error involving M3 X-ray production cross sections. 2230-2231
• 
  Matej Batic, Maria Grazia Pia, Sam J. Cipolla:
  Corrected ISICSoo class version. 2232-2233

Volume 184, Number 10, October 2013

Feature Article

• 
  Scott Bogner, Aurel Bulgac, Joseph A. Carlson, Jonathan Engel, George L. Fann, Richard J. Furnstahl, Stefano Gandolfi, Gaute Hagen, Mihai Horoi, Calvin W. Johnson, Markus Kortelainen, Ewing L. Lusk, Pieter Maris, Hai Ah Nam, Petr Navratil, Witold Nazarewicz, Esmond G. Ng, Gustavo P. A. Nobre, W. Erich Ormand, Thomas Papenbrock, Junchen Pei, Steven C. Pieper, Sofia Quaglioni, Kenneth J. Roche, Jason Sarich, Nicolas Schunck, Masha Sosonkina, Jun Terasaki, Ian J. Thompson, James P. Vary, Stefan M. Wild:
  Computational nuclear quantum many-body problem: The UNEDF project. 2235-2250

Computational physics

• 
  Deuk-Chul Kwon, Mi-Young Song, Jung-Sik Yoon, Nam-Sik Yoon:
  A feed-back control approach for global simulation of high density plasma discharges. 2251-2256
• 
  Pawel Dlotko, Ruben Specogna:
  Physics inspired algorithms for (co)homology computations of three-dimensional combinatorial manifolds with boundary. 2257-2266
• 
  L. Luo, Tariq Rafiq, Arnold Kritz:
  Improved Multi-Mode anomalous transport module for tokamak plasmas. 2267-2276
• 
  Dinesh Kumar, Abani K. Patra, E. Bruce Pitman, H. Chi:
  Parallel Godunov smoothed particle hydrodynamics (SPH) with improved treatment of Boundary Conditions and an application to granular flows. 2277-2286
• 
  Daniil A. Andrienko, Sergey T. Surzhikov, Joseph S. Shang:
  Spherical harmonics method applied to the multi-dimensional radiation transfer. 2287-2298
• 
  C. Montoliu, Néstor Ferrando, M. A. Gosálvez, Joaquín Cerdá, R. J. Colom:
  Implementation and evaluation of the Level Set method: Towards efficient and accurate simulation of wet etching for microengineering applications. 2299-2309
• 
  Mauro Lapelosa, Cameron F. Abrams:
  Transition-path theory calculations on non-uniform meshes in two and three dimensions using finite elements. 2310-2315
• 
  Reza Kamali, Ali Kharazmi:
  Investigation of multiscale fluid flow characteristics based on a hybrid atomistic-continuum method. 2316-2320

Computer programs in physics

• 
  Antonio Arbona, Antoni Artigues, Carles Bona-Casas, Joan Massó, Borja Miñano, A. Rigo, Miquel Trias, Carles Bona:
  Simflowny: A general-purpose platform for the management of physical models and simulation problems. 2321-2331
• 
  Vladimir V. Bytev, Mikhail Yu. Kalmykov, Bernd A. Kniehl:
  HYPERDIRE, HYPERgeometric functions DIfferential REduction: MATHEMATICA-based packages for differential reduction of generalized hypergeometric functions _pF_p-1, F₁, F₂, F₃, F₄. 2332-2342
• 
  Sergey G. Bondarenko, Andrey A. Sapronov:
  NLO EW and QCD proton-proton cross section calculations with mcsanc-v1.01. 2343-2350
• 
  M. D. J. Hollis, M. Tessenyi, Giovanna Tinetti:
  tau: A 1D radiative transfer code for transmission spectroscopy of extrasolar planet atmospheres. 2351-2361
• 
  Jun Gao:
  CIJET: A program for computation of jet cross sections induced by quark contact interactions at hadron colliders. 2362-2366

New version announcement

• 
  Lev Yu. Barash, Lev N. Shchur:
  RNGSSELIB: Program library for random number generation. More generators, parallel streams of random numbers and Fortran compatibility. 2367-2369

Volume 184, Number 11, November 2013

Computational physics

• 
  Roberto da Silva, Henrique A. Fernandes, José Roberto Drugowich de Felício, Wagner Figueiredo:
  Novel considerations about the non-equilibrium regime of the tricritical point in a metamagnetic model: Localization and tricritical exponents. 2371-2377
• 
  Y.-J. Lin, Matthew R. Smith, Fang-An Kuo, Hadley M. Cave, J.-C. Huang, Jong-Shinn Wu:
  A true-direction reconstruction of the quiet direct simulation method for inviscid gas flows. 2378-2390
• 
  Jan Kuipers, Aske Plaat, J. A. M. Vermaseren, H. Jaap van den Herik:
  Improving multivariate Horner schemes with Monte Carlo tree search. 2391-2395
• 
  Wei Jiang, Hanquan Wang, Xiang-Gui Li:
  A numerical study of the ground state and dynamics of atomic-molecular Bose-Einstein condensates. 2396-2407
• 
  Wei Shi, Xinyuan Wu:
  A note on symplectic and symmetric ARKN methods. 2408-2411
• 
  S. Norris, A. Vikartofsky, R. E. Wagner, Q. Su, Rainer Grobe:
  Absorbing-like boundaries for quantum field theoretical grid simulations. 2412-2418
• 
  Farah Hariri, M. Ottaviani:
  A flux-coordinate independent field-aligned approach to plasma turbulence simulations. 2419-2429
• 
  Lajos Szalmás:
  Accelerated discrete velocity method for axial-symmetric flows of gaseous mixtures as defined by the McCormack kinetic model. 2430-2437
• 
  Martin Wiebusch:
  Numerical computation of p-values with myFitter. 2438-2445
• 
  Nicolas Blöchliger, Andreas Vitalis, Amedeo Caflisch:
  A scalable algorithm to order and annotate continuous observations reveals the metastable states visited by dynamical systems. 2446-2453
• 
  Sibo Wang, Junbo Xu, Hao Wen:
  Accelerating dissipative particle dynamics with multiple GPUs. 2454-2461
• 
  Shinya Maeyama, Akihiro Ishizawa, Tomohiko Watanabe, Noriyoshi Nakajima, Shunji Tsuji-Iio, Hiroaki Tsutsui:
  Numerical techniques for parallel dynamics in electromagnetic gyrokinetic Vlasov simulations. 2462-2473
• 
  Nkosinathi Dlamini, Alessandro Sergi:
  Quantum dynamics in classical thermal baths. 2474-2477
• 
  Edoardo Di Napoli, Mario Berljafa:
  Block iterative eigensolvers for sequences of correlated eigenvalue problems. 2478-2488
• 
  Zhijun Wang, Junjie Li, Yaolin Guo, Sai Tang, Jincheng Wang:
  Unique visualization of multiply oriented lattice structures using a continuous wavelet transform. 2489-2493
• 
  Fengshun Lu, Junqiang Song, Wangqun Lin, Yufei Pang, Kaijun Ren, Peichang Shi:
  Efficient utilization of launched threads on GPUs: The spherical harmonic transform as a case study. 2494-2502
• 
  Xinlu Xu, Peicheng Yu, Samuel F. Martins, Frank S. Tsung, Viktor K. Decyk, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori:
  Numerical instability due to relativistic plasma drift in EM-PIC simulations. 2503-2514
• 
  Arno Mayrhofer, Benedict D. Rogers, Damien Violeau, Martin Ferrand:
  Investigation of wall bounded flows using SPH and the unified semi-analytical wall boundary conditions. 2515-2527
• 
  Roberto Capuzzo-Dolcetta, Mario Spera:
  A performance comparison of different graphics processing units running direct NN-body simulations. 2528-2539
• 
  Pengfei Wei, Zhenzhou Lu, Jingwen Song:
  A new variance-based global sensitivity analysis technique. 2540-2551

Computer programs in physics

• 
  Sophia Borowka, Gudrun Heinrich:
  Massive non-planar two-loop four-point integrals with SecDec 2.1. 2552-2561
• 
  Hua-Sheng Shao:
  HELAC-Onia: An automatic matrix element generator for heavy quarkonium physics. 2562-2570
• 
  Cheonho Bae, Weston M. Stacey, Tom D. Morley:
  GTROTA: A code for the solution of the coupled nonlinear extended neoclassical rotation equations in tokamak plasmas using successive over-relaxation and simulated annealing. 2571-2587
• 
  Ruben Otin:
  ERMES: A nodal-based finite element code for electromagnetic simulations in frequency domain. 2588-2595
• 
  Evgeny Z. Liverts, Nir Barnea:
  Three-body systems with Coulomb interaction. Bound and quasi-bound SS-states. 2596-2603
• 
  H. Dreiner, Kilian Nickel, Werner Porod, Florian Staub:
  Full 1-loop calculation of BR(B⁰_{s, d}→ll) in models beyond the MSSM with SARAH and SPheno. 2604-2617

New version announcement

• 
  Benzhuo Lu, Xiaolin Cheng, Jingfang Huang, James Andrew McCammon:
  AFMPB: An adaptive fast multipole Poisson-Boltzmann solver for calculating electrostatics in biomolecular systems. 2618-2619

Volume 184, Number 12, December 2013

Feature Article

• 
  Xavier Antoine, Weizhu Bao, Christophe Besse:
  Computational methods for the dynamics of the nonlinear Schrödinger/Gross-Pitaevskii equations. 2621-2633

Computational physics

• 
  Tjerk P. Straatsma, Daniel G. Chavarría-Miranda:
  On eliminating synchronous communication in molecular simulations to improve scalability. 2634-2640
• 
  Szilárd Páll, Berk Hess:
  A flexible algorithm for calculating pair interactions on SIMD architectures. 2641-2650
• 
  Daniela Tordella, Michele Iovieno, Silvano Massaglia, Andrea Mignone:
  Large-eddy simulation of hypersonic flows. Selective procedure to activate the sub-grid model wherever small scale turbulence is present. 2651-2661
• 
  Jason R. Mick, Eyad Hailat, Vincent Russo, Kamel Rushaidat, Loren Schwiebert, Jeffrey J. Potoff:
  GPU-accelerated Gibbs ensemble Monte Carlo simulations of Lennard-Jonesium. 2662-2669
• 
  Gregor Michalicek, Markus Betzinger, Christoph Friedrich, Stefan Blügel:
  Elimination of the linearization error and improved basis-set convergence within the FLAPW method. 2670-2679
• 
  Pawel Scharoch, Maciej Winiarski:
  An efficient method of DFT/LDA band-gap correction. 2680-2683
• 
  Hiroaki Ishizuka, Masafumi Udagawa, Yukitoshi Motome:
  Polynomial expansion Monte Carlo study of frustrated itinerant electron systems: Application to a spin-ice type Kondo lattice model on a pyrochlore lattice. 2684-2692
• 
  Xiangwei Jiang, Shu-Shen Li, Lin-Wang Wang:
  A small box Fast Fourier Transformation method for fast Poisson solutions in large systems. 2693-2702
• 
  Ignacio Martin-Bragado, Antonio Rivera, Gonzalo Valles, Jose Luis Gomez-Selles, María J. Caturla:
  MMonCa: An Object Kinetic Monte Carlo simulator for damage irradiation evolution and defect diffusion. 2703-2710
• 
  A. L. Zheleznyakova, Sergey T. Surzhikov:
  Molecular dynamics-based unstructured grid generation method for aerodynamic applications. 2711-2727
• 
  Jun Yan, Lin Li, Christopher O'Grady:
  Graphics Processing Unit acceleration of the Random Phase Approximation in the projector augmented wave method. 2728-2733
• 
  Eike Hermann Müller, Rupert W. Ford, Matthew C. Hort, Lois Huggett, Graham D. Riley, David J. Thomson:
  Parallelisation of the Lagrangian atmospheric dispersion model NAME. 2734-2745
• 
  P. R. O. da Silva, F. W. S. Lima, R. N. Costa Filho:
  Potts model with q=3 and 4 states on directed small-world network. 2746-2750
• 
  Ruud G. M. van der Sman:
  Investigation of Lattice Boltzmann wetting boundary conditions for capillaries with irregular polygonal cross-section. 2751-2760
• 
  Calvin W. Johnson, W. Erich Ormand, Plamen G. Krastev:
  Factorization in large-scale many-body calculations. 2761-2774
• 
  Hiroshi Watanabe, Masaru Suzuki, Nobuyasu Ito:
  Huge-scale molecular dynamics simulation of multibubble nuclei. 2775-2784
• 
  W. Michael Brown, Masako Yamada:
  Implementing molecular dynamics on hybrid high performance computers - Three-body potentials. 2785-2793
• 
  Rudy Arthur, A. D. Kennedy:
  Monte Carlo integration with subtraction. 2794-2802

Computer programs in physics

• 
  Andy Buckley, Jonathan M. Butterworth, David Grellscheid, Hendrik Hoeth, Leif Lönnblad, James Monk, Holger Schulz, Frank Siegert:
  Rivet user manual. 2803-2819
• 
  A. V. Smirnov, V. A. Smirnov:
  FIRE4, LiteRed and accompanying tools to solve integration by parts relations. 2820-2827
• 
  Nikesh S. Dattani:
  FeynDyn: A MATLAB program for fast numerical Feynman integral calculations for open quantum system dynamics on GPUs. 2828-2833
• 
  Tania Loke, Jingbo Wang:
  CUGatesDensity - Quantum circuit analyser extended to density matrices. 2834-2839
• 
  Mario A. Bernal, D. Sikansi, F. Cavalcante, Sébastien Incerti, Christophe Champion, Vladimir Ivanchenko, Ziad Francis:
  An atomistic geometrical model of the B-DNA configuration for DNA-radiation interaction simulations. 2840-2847
• 
  Zhi Yang, Xing-Gang Wu, Xian-You Wang:
  BEEC: An event generator for simulating the B_c meson production at an e⁺e^- collider. 2848-2855
• 
  Christian Blau, Helmut Grubmüller:
  g_contacts: Fast contact search in bio-molecular ensemble data. 2856-2859
• 
  Edoardo Sarti, Stefano Zamuner, Pilar Cossio, Alessandro Laio, Flavio Seno, Antonio Trovato:
  BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures. 2860-2865