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2020 – today
- 2024
[j23]Xueshi Yu, Renmin Han
, Haitao Jiao, Wenjia Meng:
Few-shot classification of Cryo-ET subvolumes with deep Brownian distance covariance. Briefings Bioinform. 26(1) (2024)- [j22]Chi Zhang, Yiran Cheng, Kaiwen Feng, Fa Zhang, Renmin Han, Jieqing Feng:
UPicker: a semi-supervised particle picking transformer method for cryo-EM micrographs. Briefings Bioinform. 26(1) (2024) - [j21]Junchi Ma, Xiaoyu Zhao, Enfeng Qi, Renmin Han, Ting Yu, Guojun Li:
Highly efficient clustering of long-read transcriptomic data with GeLuster. Bioinform. 40(2) (2024) - [j20]Junhai Qi, Chenjie Feng, Yulin Shi, Jianyi Yang, Fa Zhang, Guojun Li, Renmin Han:
FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval. Genom. Proteom. Bioinform. 22(1) (2024) - [j19]Zhidong Yang, Hongjia Li, Dawei Zang, Renmin Han, Fa Zhang:
Improved Denoising of Cryo-Electron Microscopy Micrographs with Simulation-Aware Pretraining. J. Comput. Biol. 31(6): 564-575 (2024) - [c6]Yiran Cheng, Bintao He, Fa Zhang, Renmin Han:
Serial Section Microscopy Image Inpainting Guided by Axial Optical Flow. ACM Multimedia 2024: 2964-2972 - [i4]Tianyang Xue, Lin Lu, Yang Liu, Mingdong Wu, Hao Dong, Yanbin Zhang, Renmin Han, Baoquan Chen:
GFPack++: Improving 2D Irregular Packing by Learning Gradient Field with Attention. CoRR abs/2406.07579 (2024) - 2023
- [j18]Zhao Zhang, Xia Yan, Piyang Liu, Kai Zhang, Renmin Han, Sheng Wang:
A physics-informed convolutional neural network for the simulation and prediction of two-phase Darcy flows in heterogeneous porous media. J. Comput. Phys. 477: 111919 (2023) - [c5]Zhidong Yang, Hongjia Li, Dawei Zang, Renmin Han, Fa Zhang:
SaID: Simulation-Aware Image Denoising Pre-trained Model for Cryo-EM Micrographs. ISBRA 2023: 325-336 - [i3]Bintao He, Fa Zhang, Chenjie Feng, Jianyi Yang, Xin Gao, Renmin Han:
CryoAlign: feature-based method for global and local 3D alignment of EM density maps. CoRR abs/2309.09217 (2023) - 2022
- [j17]Hongjia Li, Hui Zhang, Xiaohua Wan, Zhidong Yang, Chengmin Li, Jintao Li, Renmin Han, Ping Zhu, Fa Zhang:
Noise-Transfer2Clean: denoising cryo-EM images based on noise modeling and transfer. Bioinform. 38(7): 2022-2029 (2022) - [j16]Bintao He, Yan Zhang, Fa Zhang, Renmin Han:
Correction of image distortion in large-field ssEM stitching by an unsupervised intermediate-space solving network. Bioinform. 38(20): 4797-4805 (2022) - [j15]Shan Gao, Renmin Han, Xiangrui Zeng, Zhiyong Liu, Min Xu, Fa Zhang:
Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron Tomography. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 209-219 (2022) - [i2]Lifa Zhu, Haining Guan, Changwei Lin, Renmin Han:
Neighborhood-aware Geometric Encoding Network for Point Cloud Registration. CoRR abs/2201.12094 (2022) - 2021
- [j14]Ting Yu, Renmin Han, Zhaoyuan Fang, Zengchao Mu, Hongyu Zheng, Juntao Liu:
TransRef enables accurate transcriptome assembly by redefining accurate neo-splicing graphs. Briefings Bioinform. 22(6) (2021) - [j13]Renmin Han, Guojun Li, Xin Gao:
Robust and ultrafast fiducial marker correspondence in electron tomography by a two-stage algorithm considering local constraints. Bioinform. 37(1): 107-117 (2021) - [j12]Renmin Han, Lun Li, Peng Yang, Fa Zhang, Xin Gao:
A novel constrained reconstruction model towards high-resolution subtomogram averaging. Bioinform. 37(11): 1616-1626 (2021) - [c4]Bintao He, Fa Zhang, Huanshui Zhang, Renmin Han:
A Hybrid Frequency-Spatial Domain Model for Sparse Image Reconstruction in Scanning Transmission Electron Microscopy. ICCV 2021: 2662-2671 - [c3]Zhidong Yang, Fa Zhang, Renmin Han:
Self-Supervised Cryo-Electron Tomography Volumetric Image Restoration from Single Noisy Volume with Sparsity Constraint. ICCV 2021: 4036-4045 - 2020
- [j11]Renmin Han, Sheng Wang, Xin Gao:
Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing. Bioinform. 36(5): 1333-1343 (2020) - [j10]Lun Li, Renmin Han, Zhaotian Zhang, Tiande Guo, Zhiyong Liu, Fa Zhang:
Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography. BMC Bioinform. 21-S(6): 202 (2020) - [c2]Shan Gao, Renmin Han, Xiangrui Zeng, Xuefeng Cui, Zhiyong Liu, Min Xu, Fa Zhang:
Dilated-DenseNet for Macromolecule Classification in Cryo-electron Tomography. ISBRA 2020: 82-94
2010 – 2019
- 2019
- [j9]Renmin Han, Xiaohua Wan, Lun Li, Albert F. Lawrence, Peng Yang, Yu Li, Sheng Wang, Fei Sun, Zhiyong Liu, Xin Gao, Fa Zhang:
AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction. Bioinform. 35(2): 319-328 (2019) - [j8]Renmin Han, Zhipeng Bao, Xiangrui Zeng, Tongxin Niu, Fa Zhang, Min Xu, Xin Gao:
A joint method for marker-free alignment of tilt series in electron tomography. Bioinform. 35(14): i249-i259 (2019) - [j7]Jingrong Zhang, Zihao Wang, Yu Chen, Renmin Han, Zhiyong Liu, Fei Sun, Fa Zhang:
PIXER: an automated particle-selection method based on segmentation using a deep neural network. BMC Bioinform. 20(1): 41:1-41:14 (2019) - 2018
- [j6]Renmin Han, Fa Zhang, Xin Gao:
A fast fiducial marker tracking model for fully automatic alignment in electron tomography. Bioinform. 34(5): 853-863 (2018) - [j5]Yu Li, Fan Xu, Fa Zhang, Pingyong Xu, Mingshu Zhang, Ming Fan, Lihua Li, Xin Gao, Renmin Han:
DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy. Bioinform. 34(13): i284-i294 (2018) - [j4]Yu Li, Renmin Han, Chongwei Bi, Mo Li, Sheng Wang, Xin Gao:
DeepSimulator: a deep simulator for Nanopore sequencing. Bioinform. 34(17): 2899-2908 (2018) - [j3]Renmin Han, Yu Li, Xin Gao, Sheng Wang:
An accurate and rapid continuous wavelet dynamic time warping algorithm for end-to-end mapping in ultra-long nanopore sequencing. Bioinform. 34(17): i722-i731 (2018) - [c1]Yu Hao, Renmin Han, Xiaohua Wan, Fa Zhang, Shiwei Sun:
Fiducial marker detection via deep learning approach for electron tomography. BIBM 2018: 642-645 - [i1]Yu Li, Fan Xu, Fa Zhang, Pingyong Xu, Mingshu Zhang, Ming Fan, Lihua Li, Xin Gao, Renmin Han:
DLBI: Deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy. CoRR abs/1805.07777 (2018) - 2013
- [j2]Xiaohua Wan, Sebastien Phan, Albert F. Lawrence, Fa Zhang, Renmin Han, Zhiyong Liu, Mark H. Ellisman:
Iterative Methods in Large Field Electron Microscope Tomography. SIAM J. Sci. Comput. 35(5) (2013) - 2010
- [j1]Renmin Han, Jun Huang:
QoS Routing in General Petersen-Torus Networks: A Case Study. J. Convergence Inf. Technol. 5(7): 129-132 (2010)
Coauthor Index
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