Skip to main content

Improving Scholarly Knowledge Representation: Evaluating BERT-Based Models for Scientific Relation Classification

  • Conference paper
  • First Online:
Digital Libraries at Times of Massive Societal Transition (ICADL 2020)

Abstract

With the rapid growth of research publications, there is a vast amount of scholarly knowledge that needs to be organized in digital libraries. To deal with this challenge, techniques relying on knowledge-graph structures are being advocated. Within such graph-based pipelines, inferring relation types between related scientific concepts is a crucial step. Recently, advanced techniques relying on language models pre-trained on large corpora have been popularly explored for automatic relation classification. Despite the remarkable contributions that have been made, many of these methods were evaluated under different scenarios, which limits their comparability. To address this shortcoming, we present a thorough empirical evaluation of eight Bert-based classification models by focusing on two key factors: 1) Bert model variants, and 2) classification strategies. Experiments on three corpora show that domain-specific pre-training corpus benefits the Bert-based classification model to identify the type of scientific relations. Although the strategy of predicting a single relation each time achieves a higher classification accuracy than the strategy of identifying multiple relation types simultaneously in general, the latter strategy demonstrates a more consistent performance in the corpus with either a large or small number of annotations. Our study aims to offer recommendations to the stakeholders of digital libraries for selecting the appropriate technique to build knowledge-graph-based systems for enhanced scholarly information organization.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 79.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 99.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Notes

  1. 1.

    https://github.com/google-research/bert.

  2. 2.

    https://github.com/allenai/scibert.

References

  1. Agichtein, E., Gravano, L.: Snowball: extracting relations from large plain-text collections. In: Proceedings of the 5th ACM Conference on Digital Libraries, pp. 85–94 (2000)

    Google Scholar 

  2. Ammar, W., et al.: Construction of the literature graph in semantic scholar. In: Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 3 (Industry Papers), pp. 84–91 (2018)

    Google Scholar 

  3. Auer, S., Kovtun, V., Prinz, M., Kasprzik, A., Stocker, M., Vidal, M.E.: Towards a knowledge graph for science. In: Proceedings of the 8th International Conference on Web Intelligence, Mining and Semantics, pp. 1–6 (2018)

    Google Scholar 

  4. Auer, S., Mann, S.: Toward an open knowledge research graph. Ser. Libr. 76 (2019)

    Google Scholar 

  5. Augenstein, I., Das, M., Riedel, S., Vikraman, L., McCallum, A.: SemEval 2017 task 10: scienceie-extracting keyphrases and relations from scientific publications. In: Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017), pp. 546–555 (2017)

    Google Scholar 

  6. Beltagy, I., Lo, K., Cohan, A.: SciBERT: a pretrained language model for scientific text. In: Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing (EMNLP-IJCNLP), Hong Kong, China pp. 3615–3620. ACL, November 2019

    Google Scholar 

  7. Culotta, A., Sorensen, J.: Dependency tree kernels for relation extraction. In: Proceedings of the 42nd Annual Meeting of the Association for Computational Linguistics (ACL-04), pp. 423–429. ACL (2004)

    Google Scholar 

  8. Devlin, J., Chang, M.W., Lee, K., Toutanova, K.: BERT: Pre-training of deep bidirectional transformers for language understanding. In: Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers), Minneapolis, Minnesota, pp. 4171–4186. ACL, June 2019

    Google Scholar 

  9. Gábor, K., Buscaldi, D., Schumann, A.K., QasemiZadeh, B., Zargayouna, H., Charnois, T.: Semeval-2018 task 7: semantic relation extraction and classification in scientific papers. In: Proceedings of The 12th International Workshop on Semantic Evaluation, pp. 679–688 (2018)

    Google Scholar 

  10. Hallo, M., Luján-Mora, S., Maté, A., Trujillo, J.: Current state of linked data in digital libraries. J. Inf. Sci. 42(2), 117–127 (2016)

    Article  Google Scholar 

  11. Haslhofer, B., Isaac, A., Simon, R.: Knowledge graphs in the libraries and digital humanities domain. In: Sakr, S., Zomaya, A. (eds.) Encyclopedia of Big Data Technologies (2018)

    Google Scholar 

  12. Jaradeh, M.Y., et al.: Open research knowledge graph: next generation infrastructure for semantic scholarly knowledge. In: Proceedings of the 10th International Conference on Knowledge Capture, New York, NY, USA, pp. 243–246. ACM (2019)

    Google Scholar 

  13. Jiang, M., Diesner, J.: A constituency parsing tree based method for relation extraction from abstracts of scholarly publications. In: Proceedings of the Thirteenth Workshop on Graph-Based Methods for Natural Language Processing (TextGraphs-13), pp. 186–191 (2019)

    Google Scholar 

  14. Klampfl, S., Kern, R.: An unsupervised machine learning approach to body text and table of contents extraction from digital scientific articles. In: Aalberg, T., Papatheodorou, C., Dobreva, M., Tsakonas, G., Farrugia, C.J. (eds.) TPDL 2013. LNCS, vol. 8092, pp. 144–155. Springer, Heidelberg (2013). https://doi.org/10.1007/978-3-642-40501-3_15

    Chapter  Google Scholar 

  15. Luan, Y., He, L., Ostendorf, M., Hajishirzi, H.: Multi-task identification of entities, relations, and coreference for scientific knowledge graph construction. In: Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, pp. 3219–3232 (2018)

    Google Scholar 

  16. Luan, Y., Wadden, D., He, L., Shah, A., Ostendorf, M., Hajishirzi, H.: A general framework for information extraction using dynamic span graphs. In: Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers), pp. 3036–3046, June 2019

    Google Scholar 

  17. Manning, C.D.: Computational linguistics and deep learning. Comput. Linguist. 41(4), 701–707 (2015)

    Article  MathSciNet  Google Scholar 

  18. Quan, T.T., Hui, S.C., Fong, A.C.M., Cao, T.H.: Automatic generation of ontology for scholarly semantic web. In: McIlraith, S.A., Plexousakis, D., van Harmelen, F. (eds.) ISWC 2004. LNCS, vol. 3298, pp. 726–740. Springer, Heidelberg (2004). https://doi.org/10.1007/978-3-540-30475-3_50

    Chapter  Google Scholar 

  19. Silvescu, A., Reinoso-Castillo, J., Honavar, V.: Ontology-driven information extraction and knowledge acquisition from heterogeneous, distributed, autonomous biological data sources. In: Proceedings of the IJCAI-2001 Workshop on Knowledge Discovery from Heterogeneous, Distributed, Autonomous, Dynamic Data and Knowledge Sources (2001)

    Google Scholar 

  20. Sivasubramaniam, A., et al.: Learning metadata from the evidence in an on-line citation matching scheme. In: Proceedings of the 6th ACM/IEEE-CS Joint Conference on Digital Libraries, pp. 276–285. IEEE (2006)

    Google Scholar 

  21. Soergel, D.: Digital libraries and knowledge organization. In: Kruk, S.R., McDaniel, B. (eds.) Semantic Digital Libraries, pp. 9–39. Springer, Heidelberg (2009). https://doi.org/10.1007/978-3-540-85434-0_2

    Chapter  Google Scholar 

  22. Vahdati, S., Palma, G., Nath, R.J., Lange, C., Auer, S., Vidal, M.-E.: Unveiling scholarly communities over knowledge graphs. In: Méndez, E., Crestani, F., Ribeiro, C., David, G., Lopes, J.C. (eds.) TPDL 2018. LNCS, vol. 11057, pp. 103–115. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00066-0_9

    Chapter  Google Scholar 

  23. Wang, H., et al.: Extracting multiple-relations in one-pass with pre-trained transformers. In: Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics, Florence, Italy, pp. 1371–1377. ACL, July 2019

    Google Scholar 

  24. Weigl, D.M., Kudeki, D.E., Cole, T.W., Downie, J.S., Jett, J., Page, K.R.: Combine or connect: practical experiences querying library linked data. Proc. Assoc. Inf. Sci. Technol. 56(1), 296–305 (2019)

    Article  Google Scholar 

  25. Zhou, P., et al.: Attention-based bidirectional long short-term memory networks for relation classification. In: Proceedings of the 54th Annual Meeting of the ACL (volume 2: Short Papers), pp. 207–212 (2016)

    Google Scholar 

  26. Zhu, Y., et al.: Aligning books and movies: towards story-like visual explanations by watching movies and reading books. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 19–27 (2015)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ming Jiang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Jiang, M., D’Souza, J., Auer, S., Downie, J.S. (2020). Improving Scholarly Knowledge Representation: Evaluating BERT-Based Models for Scientific Relation Classification. In: Ishita, E., Pang, N.L.S., Zhou, L. (eds) Digital Libraries at Times of Massive Societal Transition. ICADL 2020. Lecture Notes in Computer Science(), vol 12504. Springer, Cham. https://doi.org/10.1007/978-3-030-64452-9_1

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-64452-9_1

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-64451-2

  • Online ISBN: 978-3-030-64452-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics

pFad - Phonifier reborn

Pfad - The Proxy pFad of © 2024 Garber Painting. All rights reserved.

Note: This service is not intended for secure transactions such as banking, social media, email, or purchasing. Use at your own risk. We assume no liability whatsoever for broken pages.


Alternative Proxies:

Alternative Proxy

pFad Proxy

pFad v3 Proxy

pFad v4 Proxy