Abstract
One of the primary treatment options for head and neck cancer is (chemo)radiation. Accurate delineation of the contour of the tumors is of great importance in the successful treatment of the tumor and in the prediction of patient outcomes. With this paper we take part in the HECKTOR 2021 challenge and we propose our methods for automatic tumor segmentation on PET and CT images of oropharyngeal cancer patients. To achieve this goal, we investigated different deep learning methods with the purpose of highlighting relevant image and modality related features, to refine the contour of the primary tumor. More specifically, we tested a Co-learning method [1] and a 3D Skip Spatial and Channel Squeeze and Excitation Multi-Scale Attention method (Skip-scSE-M), on the challenge dataset. The best results achieved on the test set were 0.762 mean Dice Similarity Score and 3.143 median of the Hausdorf Distance at 95\(\%\).
Aicrowd Group Name: “umcg”.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Xue, Z., et al.: Multi-modal co-learning for liver lesion segmentation on PET-CT images. IEEE Trans. Med. Imaging. https://doi.org/10.1109/TMI.2021.3089702
Chow, L.Q.M.: Head and Neck Cancer. N Engl. J. Med. 382(1), 60–72 (2020). PMID: 31893516. https://doi.org/10.1056/NEJMra1715715
Yeh, S.A.: Radiotherapy for head and neck cancer. Semin. Plast. Surg. 24(2), 127–136 (2010). https://doi.org/10.1055/s-0030-1255330
Gudi, S., et al.: Interobserver variability in the delineation of gross tumour volume and specified organs-at-risk during IMRT for head and neck cancers and the impact of FDG-PET/CT on such variability at the primary site. J. Med. Imaging Radiat. Sci. 48(2), 184–192 (2017)
Andrearczyk, V., et al.: Automatic segmentation of head and neck tumors and nodal metastases in PET-CT scans. In: Medical Imaging with Deep Learning (MIDL) (2020)
Moe, Y.M., et al.: Deep learning for automatic tumour segmentation in PET/CT images of patients with head and neck cancers. Medical Imaging with Deep Learning (2019)
Andrearczyk, V., et al.: Overview of the HECKTOR challenge at MICCAI 2021: automatic head and neck tumor segmentation and outcome prediction in PET/CT images. In: Andrearczyk, V., Oreiller, V., Hatt, M., Depeursinge, A. (eds.) HECKTOR 2021. LNCS, vol. 13209, pp. 1–37. Springer, Cham (2022)
Oreiller, V., et al.: Head and Neck Tumor Segmentation in PET/CT: The HECKTOR Challenge, Medical Image Analysis (2021). (under revision)
Abraham, N., Khan, N.M.: A novel Focal Tversky loss function with improved attention U-Net for lesion segmentation, arXiv preprint arXiv:1810.07842 (2018)
Islam, M., Wijethilake, N., Ren, H.: Glioblastoma multiforme prognosis: MRI missing modality generation, segmentation and radiogenomic survival prediction. Comput. Med. Imaging Graph. 91, 101906 (2021)
Acknowledgement
We would like to thank the Center for Information Technology of the University of Groningen for their support and for providing access to the Peregrine high performance computing cluster.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2022 Springer Nature Switzerland AG
About this paper
Cite this paper
De Biase, A. et al. (2022). Skip-SCSE Multi-scale Attention and Co-learning Method for Oropharyngeal Tumor Segmentation on Multi-modal PET-CT Images. In: Andrearczyk, V., Oreiller, V., Hatt, M., Depeursinge, A. (eds) Head and Neck Tumor Segmentation and Outcome Prediction. HECKTOR 2021. Lecture Notes in Computer Science, vol 13209. Springer, Cham. https://doi.org/10.1007/978-3-030-98253-9_10
Download citation
DOI: https://doi.org/10.1007/978-3-030-98253-9_10
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-98252-2
Online ISBN: 978-3-030-98253-9
eBook Packages: Computer ScienceComputer Science (R0)