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On the Cost of Simulating a Parallel Boolean Automata Network by a Block-Sequential One

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Theory and Applications of Models of Computation (TAMC 2017)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 10185))

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Abstract

In this article we study the minimum number \(\kappa \) of additional automata that a Boolean automata network (BAN) associated with a given block-sequential update schedule needs in order to simulate a given BAN with a parallel update schedule. We introduce a graph that we call \({{\mathrm{\mathsf {NECC}}}}\) graph built from the BAN and the update schedule. We show the relation between \(\kappa \) and the chromatic number of the \({{\mathrm{\mathsf {NECC}}}}\) graph. Thanks to this \({{\mathrm{\mathsf {NECC}}}}\) graph, we bound \(\kappa \) in the worst case between n / 2 and \(2n/3+2\) (n being the size of the BAN simulated) and we conjecture that this number equals n / 2. We support this conjecture with two results: the clique number of a \({{\mathrm{\mathsf {NECC}}}}\) graph is always less than or equal to n / 2 and, for the subclass of bijective BANs, \(\kappa \) is always less than or equal to \(n/2+1\).

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References

  1. Aracena, J.: On the robustness of update schedules in boolean networks. Biosystems 97, 1–8 (2009)

    Article  Google Scholar 

  2. Bruck, J., Goodman, J.W.: A generalized convergence theorem for neural networks. IEEE Trans. Inf. Theor. 34, 1089–1092 (1988)

    Article  MathSciNet  MATH  Google Scholar 

  3. Delorme, M., Mazoyer, J., Ollinger, N., Theyssier, G.: Bulking I: an abstract theory of bulking. Theor. Comput. Sci. 412, 3866–3880 (2011)

    Article  MathSciNet  MATH  Google Scholar 

  4. Delorme, M., Mazoyer, J., Ollinger, N., Theyssier, G.: Bulking II: classifications of cellular automata. Theor. Comput. Sci. 412, 3881–3905 (2011)

    Article  MathSciNet  MATH  Google Scholar 

  5. Demongeot, J., Elena, A., Sené, S.: Robustness in regulatory networks: a multi-disciplinary approach. Acta Biotheor. 56, 27–49 (2008)

    Article  Google Scholar 

  6. Doty, D., Lutz, J.H., Patitz, M.J., Schweller, R.T., Summers, S.M., Woods, D.: The tile assembly model is intrinsically universal. In: Proceedings of FOCS 2012, pp. 302–310. IEEE Computer Society (2012)

    Google Scholar 

  7. Goles, E., Martínez, S.: Neural and Automata Networks: Dynamical Behavior and Applications. Kluwer Academic Publishers, Dordrecht (1990)

    Book  MATH  Google Scholar 

  8. Goles, E., Matamala, M.: Computing complexity of symmetric quadratic neural networks. In: Proceedings of ICANN 1993, p. 677 (1993)

    Google Scholar 

  9. Goles, E., Noual, M.: Disjunctive networks and update schedules. Adv. Appl. Math. 48, 646–662 (2012)

    Article  MathSciNet  MATH  Google Scholar 

  10. Goles, E., Salinas, L.: Comparison between parallel and serial dynamics of boolean networks. Theor. Comput. Sci. 396, 247–253 (2008)

    Article  MathSciNet  MATH  Google Scholar 

  11. Guillon, P.: Projective subdynamics and universal shifts. In: DMTCS Proceedings of AUTOMATA 2011, pp. 123–134 (2011)

    Google Scholar 

  12. Hopfield, J.J.: Neural networks and physical systems with emergent collective computational abilities. Proc. Nat. Acad. Sci. USA 79, 2554–2558 (1982)

    Article  MathSciNet  MATH  Google Scholar 

  13. Kauffman, S.: Gene regulation networks: a theory for their global structures and behaviors. Curr. Top. Dev. Biol. 6, 145–181 (1971). Springer

    Article  Google Scholar 

  14. Kauffman, S.A.: Metabolic stability and epigenesis in randomly constructed genetic nets. J. Theor. Biol. 22, 437–467 (1969)

    Article  MathSciNet  Google Scholar 

  15. Lafitte, G., Weiss, M.: Universal tilings. In: Thomas, W., Weil, P. (eds.) STACS 2007. LNCS, vol. 4393, pp. 367–380. Springer, Heidelberg (2007). doi:10.1007/978-3-540-70918-3_32

    Chapter  Google Scholar 

  16. Lafitte, G., Weiss, M.: An almost totally universal tile set. In: Chen, J., Cooper, S.B. (eds.) TAMC 2009. LNCS, vol. 5532, pp. 271–280. Springer, Heidelberg (2009). doi:10.1007/978-3-642-02017-9_30

    Chapter  Google Scholar 

  17. McCulloch, W.S., Pitts, W.: A logical calculus of the ideas immanent in nervous activity. J. Math. Biophys. 5, 115–133 (1943)

    Article  MathSciNet  MATH  Google Scholar 

  18. Melliti, T., Regnault, D., Richard, A., Sené, S.: On the convergence of boolean automata networks without negative cycles. In: Kari, J., Kutrib, M., Malcher, A. (eds.) AUTOMATA 2013. LNCS, vol. 8155, pp. 124–138. Springer, Heidelberg (2013). doi:10.1007/978-3-642-40867-0_9

    Chapter  Google Scholar 

  19. Melliti, T., Regnault, D., Richard, A., Sené, S.: Asynchronous simulation of boolean networks by monotone boolean networks. In: El Yacoubi, S., Wąs, J., Bandini, S. (eds.) ACRI 2016. LNCS, vol. 9863, pp. 182–191. Springer, Cham (2016). doi:10.1007/978-3-319-44365-2_18

    Chapter  Google Scholar 

  20. Noual, M.: Updating automata networks. Ph.D. thesis, École Normale Supérieure de Lyon (2012)

    Google Scholar 

  21. Noual, M., Regnault, D., Sené, S.: About non-monotony in boolean automata networks. Theor. Comput. Sci. 504, 12–25 (2013)

    Article  MathSciNet  MATH  Google Scholar 

  22. Ollinger, N.: Universalities in cellular automata. In: Rozenberg, G., et al. (eds.) Handbook of Natural Computing, pp. 189–229. Springer, Heidelberg (2012)

    Chapter  Google Scholar 

  23. Orponen, P.: Computing with truly asynchronous threshold logic networks. Theor. Comput. Sci. 174, 123–136 (1997)

    Article  MathSciNet  MATH  Google Scholar 

  24. Tchuente, M.: Sequential simulation of parallel iterations and applications. Theor. Comput. Sci. 48, 135–144 (1986)

    Article  MathSciNet  MATH  Google Scholar 

  25. Thomas, R.: Boolean formalization of genetic control circuits. J. Theor. Biol. 42, 563–585 (1973)

    Article  Google Scholar 

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Acknowledgements

This work has been partially supported by the project PACA APEX FRI.

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Correspondence to Florian Bridoux .

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Bridoux, F., Guillon, P., Perrot, K., Sené, S., Theyssier, G. (2017). On the Cost of Simulating a Parallel Boolean Automata Network by a Block-Sequential One. In: Gopal, T., Jäger , G., Steila, S. (eds) Theory and Applications of Models of Computation. TAMC 2017. Lecture Notes in Computer Science(), vol 10185. Springer, Cham. https://doi.org/10.1007/978-3-319-55911-7_9

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  • DOI: https://doi.org/10.1007/978-3-319-55911-7_9

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