From 2a519fad436ca918ae48e0117c2e8fd8d6acd859 Mon Sep 17 00:00:00 2001 From: "Darren A. Natale" Date: Tue, 17 Jun 2025 12:58:56 -0400 Subject: [PATCH] Update StandardizationGuidelines.md --- docs/StandardizationGuidelines.md | 44 ++++++++++++++++--------------- 1 file changed, 23 insertions(+), 21 deletions(-) diff --git a/docs/StandardizationGuidelines.md b/docs/StandardizationGuidelines.md index 77e41c686..1e01794b2 100644 --- a/docs/StandardizationGuidelines.md +++ b/docs/StandardizationGuidelines.md @@ -3,40 +3,42 @@ layout: doc title: Ontology Standardization Guidelines --- -### Social +## Social SOCIAL External axioms #1443 & #1991 | possible new "what to do with terms" principle (can be p14) -### Communication +## Communication -COMMUNICATION Ontology subsets documentation #466 -COMMUNICATION Referring to taxa not in NCBITaxon #434 -COMMUNICATION Document how to add logo #72 -COMMUNICATION Short ontology descriptions #1968 -COMMUNICATION Documentation for license #1840 + ### Documentation + - Documentation for license #1840 = github repository SHOULD have a LICENSE file (named 'LICENSE' with no extension, LICENSE.md, or LICENSE.txt; the latter will be plain text) + - Fully document ontology subsets #466 + - Link terms to relevant discussion on issue tracker #1097 -### Content +## Content -CONTENT Discourage BFO shadow classes #1539 -CONTENT? Ignoring NCIT (no issue, but has come up that NCIT is not well-formed enough to be a concern re: things like overlap) -METADATA Term adoption #2330 (also #2324) - -### Technical + ### Terms + Discourage BFO shadow classes #1539 + Ignoring NCIT (no issue, but has come up that NCIT is not well-formed enough to be a concern re: things like overlap) + Referring to taxa not in NCBITaxon #434 + Term adoption #2330 (also #2324) + Versioning term identifiers #1347 + ### Products + Every ontology SHOULD provide a base + Imports should be merged into the main release file + ### Coherency + Every ontology primary release MUST be consistent and coherent + Every ontology MUST be coherent when classified together with RO, BFO, and COB + Every ontology SHOULD be coherent when classified together with all its base-dependencies +## Technical +METADATA Language tags #479 (also #325) Not yet classified: - Every ontology SHOULD provide a base - Every ontology primary release MUST be consistent and coherent - Every ontology MUST be coherent when classified together with RO, BFO, and COB - Every ontology SHOULD be coherent when classified together with all its base-dependencies -METADATA Versioning term identifiers #1347 / -METADATA Linking term to discussion on tracker #1097 -METADATA Language tags #479 (also #325) -METADATA Synonym types #2450 +METADATA Synonym types #2450 = Use standardized SynonymTypes (OBO) METADATA Ontology root terms annotation #2149 METADATA Publications metadata #1671 METADATA Ontology merging #1548 pFad - Phonifier reborn

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