bug fix with mmc2.xlsx

alexandriai168 · alexandriai168 · commit 3b9cd344c8fe · 2025-04-22T13:20:37.000-07:00
diff --git a/build/crc_organoids/02-omics-crcPDO.py b/build/crc_organoids/02-omics-crcPDO.py
@@ -226,7 +226,7 @@ def map_copy_number(copy_number_data, improve_id_data, entrez_data):
     if args.parse:
         print("Parsing excel file.")
         # Download parse excel file to get mutation data and the copy num data
-        mutation_df, copy_num_df = parse_mmc2("/tmp/mmc2.xlsx/mmc2.xlsx")
+        mutation_df, copy_num_df = parse_mmc2("/tmp/mmc2.xlsx")
         # Save mutation and copy number data into csv format
         mutation_df.to_csv("/tmp/mutation_data.csv")
         copy_num_df.to_csv("/tmp/copy_num_data.csv")
