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Broad_sanger 05a_remove_problem_drugs.py Script Failing #442

@jjacobson95

Description

@jjacobson95

The 05a_remove_problem_drugs.py script is failing in the build_misc.sh step. I've tracked down the root of the issue and it has to do how the docker image is built. I'm not sure what changed, but for some reason, not all of the python requirements are installing. This Illegal instruction is due to python failing and exiting when trying to import polars.

Logs:

2025-08-05 12:42:34 Running 05a_remove_problem_drugs.py...
2025-08-05 12:42:34 Error on or near line 10 while executing: /opt/venv/bin/python 05a_remove_problem_drugs.py
2025-08-05 12:42:34 build_misc.sh: line 10:     8 Illegal instruction     /opt/venv/bin/python 05a_remove_problem_drugs.py

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