From 83d34e4972351a6152aa1b9012a4557ee6aba195 Mon Sep 17 00:00:00 2001 From: Jeremy Date: Thu, 1 May 2025 12:25:11 -0700 Subject: [PATCH 1/2] This resolves an inconsistency for validating new and old datasets --- build/docker/Dockerfile.upload | 23 +++++++++++++---------- 1 file changed, 13 insertions(+), 10 deletions(-) diff --git a/build/docker/Dockerfile.upload b/build/docker/Dockerfile.upload index 8eae6b24..e08bb0c3 100644 --- a/build/docker/Dockerfile.upload +++ b/build/docker/Dockerfile.upload @@ -11,15 +11,18 @@ RUN apt-get update && \ apt-get install -y git curl gnupg && \ rm -rf /var/lib/apt/lists/* -# Install GitHub CLI (gh) -RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | \ - gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg && \ - echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | \ - tee /etc/apt/sources.list.d/github-cli.list > /dev/null && \ - apt-get update && \ - apt-get install -y gh && \ - rm -rf /var/lib/apt/lists/* +# # Install GitHub CLI (gh) +# RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | \ +# gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg && \ +# echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | \ +# tee /etc/apt/sources.list.d/github-cli.list > /dev/null && \ +# apt-get update && \ +# apt-get install -y gh && \ +# rm -rf /var/lib/apt/lists/* + +# RUN git clone https://github.com/PNNL-CompBio/coderdata.git +# WORKDIR /usr/src/app/coderdata -RUN git clone https://github.com/PNNL-CompBio/coderdata.git -WORKDIR /usr/src/app/coderdata \ No newline at end of file +ADD schema schema +ADD scripts scripts \ No newline at end of file From e5912ebd812aa026ba97de4639438f38a754380b Mon Sep 17 00:00:00 2001 From: Jeremy Date: Thu, 1 May 2025 12:52:45 -0700 Subject: [PATCH 2/2] Schema fix --- schema/coderdata.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/schema/coderdata.yaml b/schema/coderdata.yaml index 4467eba4..a6421a81 100755 --- a/schema/coderdata.yaml +++ b/schema/coderdata.yaml @@ -188,7 +188,7 @@ classes: - source - study attributes: - drug_drug_2: + improve_drug_1: description: improve_drug_id of first drug improve_drug_2: description: imrrove_drug_id of second drug pFad - Phonifier reborn

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