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Copy file name to clipboardExpand all lines: structure/alignment.md
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### Combinatorial Extension (CE)
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The Combinatorial Extension (CE) algorithm was originally developed by [Shindyalov and Bourne in 1998](http://peds.oxfordjournals.org/content/11/9/739.short).
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The Combinatorial Extension (CE) algorithm was originally developed by
For proteins without a circular permutation, CE-CP results look very similar to
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CE results (with perhaps some minor differences and a slightly longer
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calculation time). If a circular permutation is found, the two halves of the
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proteins will be shown in different colors:
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CE-CP was developed by Spencer E. Bliven, Philip E. Bourne, and Andreas Prlić.
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### FATCAT - rigid
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This is a Java implementation of the original FATCAT algorithm. [Yuzhen Ye & Adam Godzik in 2003] (http://bioinformatics.oxfordjournals.org/content/19/suppl_2/ii246.abstract)
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This is a Java implementation of the original FATCAT algorithm by [Yuzhen Ye
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