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‎_includes/citation-2000.md

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**BioJava: open source components for bioinformatics**<br/>
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*Matthew Pocock; Thomas Down; Tim Hubbard* <br/>
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*Matthew Pocock, Thomas Down, & Tim Hubbard* <br/>
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[ACM SIGBIO Newsletter (2000) 20 (2): 10-12.](https://dl.acm.org/citation.cfm?id=360266) <br/>
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[![doi](https://img.shields.io/badge/doi-10.1145%2360262.360266-blue.svg?style=flat)](https://dl.acm.org/citation.cfm?id=360266)
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[![doi](https://img.shields.io/badge/doi-10.1145%2F360262.360266-blue.svg?style=flat)](https://dl.acm.org/citation.cfm?id=360266)

‎_includes/citation-2008.md

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**BioJava: an open-source framework for bioinformatics**<br/>
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*R. C. G. Holland, T. A. Down, M. Pocock, A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates, M. Heuer, M. J. Schreiber* <br/>
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*R. C. G. Holland, T. A. Down, M. Pocock, A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates, M. Heuer, & M. J. Schreiber* <br/>
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[Bioinformatics (2008) 24 (18): 2096–2097.](https://academic.oup.com/bioinformatics/article/24/18/2096/192730) <br/>
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[![doi](https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2btn397-blue.svg?style=flat)](https://academic.oup.com/bioinformatics/article/24/18/2096/192730) [![pubmed](https://img.shields.io/badge/pubmed-18689808-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/18689808)
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[![doi](https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbtn397-blue.svg?style=flat)](https://doi.org/10.1093/bioinformatics/btn397) [![pubmed](https://img.shields.io/badge/pubmed-18689808-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/18689808)

‎_includes/citation-2012.md

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**BioJava: an open-source framework for bioinformatics in 2012**<br/>
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*Andreas Prlic; Andrew Yates; Spencer E. Bliven; Peter W. Rose; Julius Jacobsen; Peter V. Troshin; Mark Chapman; Jianjiong Gao; Chuan Hock Koh; Sylvain Foisy; Richard Holland; Gediminas Rimsa; Michael L. Heuer; H. Brandstatter-Muller; Philip E. Bourne; Scooter Willis* <br/>
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*Andreas Prlic, Andrew Yates, Spencer E. Bliven, Peter W. Rose, Julius Jacobsen, Peter V. Troshin, Mark Chapman, Jianjiong Gao, Chuan Hock Koh, Sylvain Foisy, Richard Holland, Gediminas Rimsa, Michael L. Heuer, H. Brandstatter-Muller, Philip E. Bourne, & Scooter Willis* <br/>
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[Bioinformatics (2012) 28 (20): 2693-2695.](http://bioinformatics.oxfordjournals.org/content/28/20/2693) <br/>
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[![doi](https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbts494-blue.svg?style=flat)](http://bioinformatics.oxfordjournals.org/content/28/20/2693) [![pubmed](https://img.shields.io/badge/pubmed-22877863-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/22877863)
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[![doi](https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbts494-blue.svg?style=flat)](https://doi.org/10.1093/bioinformatics/bts494) [![pubmed](https://img.shields.io/badge/pubmed-22877863-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/22877863)

‎_includes/citation-2017.md

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**BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank**<br/>
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*Jianjiong Gao, Andreas Prlić, Chunxiao Bi, Wolfgang F Bluhm, Dimitris Dimitropoulos, Dong Xu, Philip E Bourne, Peter W Rose* <br/>
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*Jianjiong Gao, Andreas Prlić, Chunxiao Bi, Wolfgang F Bluhm, Dimitris Dimitropoulos, Dong Xu, Philip E Bourne, & Peter W Rose* <br/>
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[Bioinformatics (2017) 33 (13): 2047–2049.](https://academic.oup.com/bioinformatics/article/33/13/2047/3002764) <br/>
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[![doi](https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2btx101-blue.svg?style=flat)](https://academic.oup.com/bioinformatics/article/33/13/2047/3002764) [![pubmed](https://img.shields.io/badge/pubmed-28334105-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/28334105)
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[![doi](https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbtx101-blue.svg?style=flat)](https://academic.oup.com/bioinformatics/article/33/13/2047/3002764) [![pubmed](https://img.shields.io/badge/pubmed-28334105-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/28334105)

‎_includes/citation-2019.md

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**BioJava 5: A community driven open-source bioinformatics library**<br/>
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*Aleix Lafita, Spencer Bliven, Andreas Prlić, Dmytro Guzenko, Peter W. Rose, Anthony Bradley, Paolo Pavan, Douglas Myers-Turnbull, Yana Valasatava, Michael Heuer, Matt Larson, Stephen K. Burley, & Jose M. Duarte* <br/>
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[PLOS Computational Biology (2019) 15(2):e1006791.](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006791) <br/>
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[![doi](https://img.shields.io/badge/doi-10.1371%2Fjournal.pcbi.1006791-blue.svg?style=flat)](https://doi.org/10.1371/journal.pcbi.1006791) [![pubmed](https://img.shields.io/badge/pubmed-30735498-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/30735498)

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