From 3a2c5ecd781b320aa98ffa440c5c2ebeae1ed47c Mon Sep 17 00:00:00 2001 From: amyheather Date: Tue, 25 Mar 2025 14:15:01 +0000 Subject: [PATCH 1/3] feat(home): add info box explaining st.spinner() absence with stlite --- Home.py | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/Home.py b/Home.py index d9e64ea..5ee78a7 100644 --- a/Home.py +++ b/Home.py @@ -24,6 +24,16 @@ """ ) +st.divider() +st.info(""" +The apps use `st.spinner()` to show a spinning icon when the model is running, +but this does not work with `stlite`. Hence, it may appear like nothing is +happening, when the model is actually running behind the scenes (once you +click "simulate"). This is mainly relevant to the stroke model which takes a +little longer to run, but you can speed it up by reducing the number of +replications. +""", icon="ℹī¸") + st.divider() st.markdown( """ From 4567fcdc6d4a39d1b9fc95e8a1e5167ad49f70df Mon Sep 17 00:00:00 2001 From: amyheather Date: Tue, 25 Mar 2025 14:16:26 +0000 Subject: [PATCH 2/3] chore(release): update changelog and citation.cff for v1.0.2 --- CHANGELOG.md | 8 ++++++++ CITATION.cff | 2 +- 2 files changed, 9 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 998deb8..927dbc9 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,14 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). Dates formatted as YYYY-MM-DD as per [ISO standard](https://www.iso.org/iso-8601-date-and-time-format.html). +## v1.0.2 - 2025-03-25 + +Add note about `st.spinner()` to the home page. + +### Changed + +* Explained that `st.spinner()` won't work on stlite in an info box in `Home.py`. + ## v1.0.1 - 2025-03-25 Update author list, add DOI, and correct app home page. diff --git a/CITATION.cff b/CITATION.cff index 767c6a7..a8bc246 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -29,5 +29,5 @@ repository-code: 'https://github.com/pythonhealthdatascience/llm_simpy_models' abstract: >- The SimPy models and apps generated by LLMs, deployed as a single app. license: MIT -version: '1.0.1' +version: '1.0.2' date-released: '2025-03-25' \ No newline at end of file From 2ea6799465f632d9967224f3047f2e42d9288a8e Mon Sep 17 00:00:00 2001 From: amyheather Date: Tue, 25 Mar 2025 15:30:37 +0000 Subject: [PATCH 3/3] docs(llm_simpy): update title of llm_simpy repository (+ add line breaks and DOI badge to README) --- Home.py | 7 +++---- README.md | 13 ++++++++++++- 2 files changed, 15 insertions(+), 5 deletions(-) diff --git a/Home.py b/Home.py index 5ee78a7..e6aede7 100644 --- a/Home.py +++ b/Home.py @@ -12,10 +12,9 @@ """ This application is complementary to: -> Thomas Monks, Alison Harper, and Amy Heather. **Using Large -Language Models to support researchers reproduce and reuse unpublished health -care discrete-event simulation computer models: a feasibility and pilot study -in Python**. https://github.com/pythonhealthdatascience/llm_simpy. +> Thomas Monks, Alison Harper, and Amy Heather. **Research Compendium: +Replicating Simulations in Python using Generative AI**. +https://github.com/pythonhealthdatascience/llm_simpy. It deploys the streamlit applications generated using Perplexity as a single app via stlite and GitHub pages. diff --git a/README.md b/README.md index 060a1af..657fdcb 100644 --- a/README.md +++ b/README.md @@ -1,11 +1,12 @@ [![Licence: MIT](https://img.shields.io/badge/Licence-MIT-yellow.svg)](https://opensource.org/licenses/MIT) [![Python 3.10+](https://img.shields.io/badge/-Python_â‰Ĩ_3.10-306998?logo=python&logoColor=white)](https://www.python.org/downloads/release/python-360+/) +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.15082494.svg)](https://doi.org/10.5281/zenodo.15082494) # Complementary repository: Final discrete-event simulation models and streamlit applications from Large Language Models This repository is complementary to: -> Thomas Monks, Alison Harper, and Amy Heather. **Using Large Language Models to support researchers reproduce and reuse unpublished health care discrete-event simulation computer models: a feasibility and pilot study in Python**. https://github.com/pythonhealthdatascience/llm_simpy. +> Thomas Monks, Alison Harper, and Amy Heather. **Research Compendium: Replicating Simulations in Python using Generative AI**. https://github.com/pythonhealthdatascience/llm_simpy. It contains the final formatted code from each of the SimPy discrete-event simulation models that were generated by Perplexity as part of that project. @@ -24,6 +25,8 @@ The stroke `.py` files combine the seperate model and app .py files from the [ll For a full record of the generation of these models, please refer to: https://github.com/pythonhealthdatascience/llm_simpy. +
+ ## đŸ‘Ĩ Authors * Thomas Monks    [![ORCID: Monks](https://img.shields.io/badge/ORCID-0000--0003--2631--4481-brightgreen)](https://orcid.org/0000-0003-2631-4481) @@ -32,6 +35,8 @@ For a full record of the generation of these models, please refer to: https://gi * Amy Heather    [![ORCID: Heather](https://img.shields.io/badge/ORCID-0000--0002--6596--3479-brightgreen)](https://orcid.org/0000-0002-6596-3479) +
+ ## 🌐 Creating the environment The project uses `conda` to manage dependencies. Navigate your terminal to the directory containing the code and run: @@ -48,6 +53,8 @@ conda activate gen_simpy_apps This environment is a simplified version of that from the [llm_simpy](https://github.com/pythonhealthdatascience/llm_simpy) repository, containing only the dependencies required for running the apps. +
+ ## đŸ–Ĩī¸ Viewing the apps locally For deployment, we have brought the LLM-generated apps together into a single app, which can be deployed by running: @@ -68,6 +75,8 @@ To test the stlite app locally, run the following command, and then open + ## 📝 Citation Please cite the archived repository: @@ -80,6 +89,8 @@ You can also cite this GitHub repository as: A `CITATION.cff` file is also provided. +
+ ## 💰 Funding This project was developed as part of the project STARS: Sharing Tools and Artefacts for Reproducible Simulations. It is supported by the Medical Research Council [grant number [MR/Z503915/1](https://gtr.ukri.org/projects?ref=MR%2FZ503915%2F1)]. \ No newline at end of file pFad - Phonifier reborn

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