Verify latest release

• I verified that the issue exists in the latest pnpm release

pnpm version

10.0.0

Which area(s) of pnpm are affected? (leave empty if unsure)

CLI

Link to the code that reproduces this issue or a replay of the bug

https://github.com/haines/pnpm-patched-dependencies-warning

Reproduction steps

pnpm install when package.json contains patchedDependencies.

Describe the Bug

A spurious warning is printed. Patches are still applied.

The following dependencies have build scripts that were ignored: ...
To allow the execution of build scripts for these packages, add their names to "pnpm.onlyBuiltDependencies" in your "package.json", then run "pnpm rebuild"

Expected Behavior

No warning about ignored build scripts.

Which Node.js version are you using?

22.13.0

Which operating systems have you used?

• macOS
• Windows
• Linux

If your OS is a Linux based, which one it is? (Include the version if relevant)

No response