Notes ch15 RCBD v1
Notes ch15 RCBD v1
• If the experimental units are widely dispersed over time and/or space, we might expect
them to be heterogeneous.
RCBD - defined
1. Experimental units are partitioned into b blocks each containing at least a number of
experimental units (where a is the number of treatments).
2. Within each block, treatments are randomly assigned to units belonging to that block.
1
Model:
yij = µ + βj + τi + ij , for i = 1, . . . , a, j = 1, . . . , b.
where µ is the overall mean, βj is the jth block effect, and τi is the ith treatment effect, and
ij is the experimental error.
Model Assumptions:
1. E[ij ] = 0
6. No treatment × block interaction. (i.e. the effect of the treatment does not depend on
the block.)
ANOVA
Source d.f. SS MS F
1 Pb SSblock
Blocks b−1 a j=1 y.j2 − y..2 /(ab) b−1
1 Pa SStreat M Streat
Treatment a−1 b i=1 yi.2 − y..2 /(ab) a−1 M SE
SSE
Error (a − 1)(b − 1) SStotal − SSblock − SStreat (a−1)(b−1)
Pa Pb
Total ab − 1 i=1 j=1 yij2 − y..2 /(ab)
we use
M Streat
F = ∼F df 1 = a−1, df 2 = (a−1)(b−1)
M SE
and reject H0 if F > Fα, df 1 = a−1, df 2 = (a−1)(b−1) .
Treatment Means:
2
µ̂i = ȳi.
var( ȳi. ) = σ 2 /b
var(ȳ
ˆ i. ) = M Serror /b
A (1 − α) 100 % confidence interval for µi is
q
ȳi. ± tα/2; d.f. = (a−1)(b−1) var(ȳ
ˆ i. )
Contrasts:
Treatments
Contrast A B C D E F
1. Control Vs Inoculants 1 1 1 1 1 -5
2. Seed Vs Bloom/ripe 4 -1 -1 -1 -1 0
3. Bloom Vs Ripening 0 1 1 1 -3 0
4. Within Bloom 0 1 -1 0 0 0
5. “ ” 0 1 1 -2 0 0
3
SAS Results:
ANOVA
Source d.f. SS MS F
Blocks 3 3.14 1.05
Treatment 5 31.65 6.33 4.82**
Ctrl Vs Inoc 1 10.74 10.74 8.17*
Sdlng Vs B&R 1 .08 .08 0.06
Blm Vs Rpn 1 3.31 3.31 2.52
w/i Blm 2 17.52 8.76 6.66**
Error 15 19.72 1.31
Total 23 54.51
Conclusions: Combine the results of the hypothesis testing with observing the treatment
means. Doing so we conclude that
1. Fungus reduces oil content of redwing flaxseed
2. Inoculation during early to midbloom reduces oil content more than by inoculation during
late bloom.
Case 2: RCBD w/ replicated treatments
In some cases, we may have an interest in interaction between the treatments and blocks. In
the example below, we have four blocks. There are six experimental units within each block.
We have three treatments. We will randomly assign two of each treatment to each block.
Notation:
a = number of treatments
b = number of blocks
r = number of replicates of each treatment in each block
yijk = response for replicate k of treatment i in block j
Model:
yijk = µ + βj + τi + γij + ijk
where µ is the overall mean, βj is the jth block effect, τi is the ith treatment effect, γij is the
interaction effect from the ith treatment and jth block, and ijk is the experimental error.
We have the usual assumptions of normality of the error terms with homogeneous variance.
For model estimation, we have zero sum constraints on βj , τi , and γij .
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ANOVA
Source d.f. SS MS F
SSblock
Blocks b−1 SSblock b−1
SStreat M Streat
Treatment a−1 SStreat a−1 M SE
SSB×T M SB×T
B×T (a − 1)(b − 1) SSB×T (a−1)(b−1) M SE
SSE
Error ab(r − 1) SSerror ab(r−1)
Total abr − 1
we use
M Streat
F = ∼F df 1 = a−1, df 2 = ab(r−1)
M SE
and reject H0 if F > Fα, df 1 = a−1, df 2 = ab(r−1) .
we use
M SB×T
F = ∼F df 1 = (a−1)(b−1), df 2 = ab(r−1)
M SE
and reject H0 if F > Fα, df 1 = (a−1)(b−1), df 2 = ab(r−1) .
Treatment Means:
µ̂i = ȳi..
var( ȳi.. ) = σ 2 /(br)
var(ȳ
ˆ i.. ) = M Serror /(br)
A (1 − α) 100 % confidence interval for µi is
q
ȳi.. ± tα/2; d.f. = ab(r−1) var(ȳ
ˆ i.. )
5
Example: Wheat
An agronomist wants to compare the yields of three varieties of wheat. A field is divided
into 4 blocks, each containing 6 plots. Each variety is randomly applied to two plots in each
block.
Experimental Design: Randomized Complete Block Design with Replication of Treatments
within Blocks.
ANOVA
Source d.f. SS MS F
Blocks 3 996 332
Treatment 2 112 56 8.00**
Interaction 6 216 36 5.14**
Error 12 84 7
Total 23 1408
Conclusions:
1. Yield is effected by variety. Examining the means one can see that variety B has the
highest yield with variety A and C about the same.
2. There is interaction present between variety and blocks. Plot the treatment by block
means to describe the interaction.
3. Note from the SAS output that blocks are significant. If blocks had not been significant
then this indicates that there is no need to use blocks in the design.
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Case 3: RCBD w/ subsampling
Notation:
a = number of treatments
b = number of blocks
r = number of subsamples in each experimental unit
yijk = response for subsample k of treatment i in block j
Model:
yijk = µ + βj + τi + ijk
where µ is the overall mean, βj is the jth block effect, τi is the ith treatment effect, and ijk
is the experimental error.
ANOVA
Source d.f. SS MS F
SSblock
Blocks b−1 SSblock b−1
SStreat M Streat
Treatment a−1 SStreat a−1 M SE
SSerror
Error (a − 1)(b − 1) SSerror (a−1)(b−1)
SSsub
Subsamples ab(r − 1) SSsub ab(r−1)
Total abr − 1
Treatment Means:
µ̂i = ȳi..
var( ȳi.. ) = σ 2 /(br)
var(ȳ
ˆ i.. ) = M Serror /(br)
A (1 − α) 100 % confidence interval for µi is
q
ȳi.. ± tα/2; d.f. = (a−1)(b−1) var(ȳ
ˆ i.. )
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Example: Wireworms (Snedecor and Cochran 1980)
An agronomist wishes to determine the efficacy of two fumigants C and S for controlling
wireworms. A field is divided into 5 blocks, each containing 3 plots. Each of the three
treatments fumigant C, fumigant S, and the control 0 were randomly assigned to one plot
within each block. In each experimental plot, the number of wireworms was counted in each
of four subsamples.
Experimental Design: Randomized Complete Block Design with Subsampling
ANOVA
Source d.f. SS MS F
Blocks 4 151.2 38.0
Treatment 2 293.4 146.7 05.98*
Control Vs Other 1 291.4 291.4 11.88**
C Vs S 1 2.0 2.0 00.08
Error = Block*Treat 8 196.2 24.5
Subsamples (w/i plots) 45 409.8 9.1
Total 59 1050.6
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Analysis of Plot Means - See SAS program.
ANOVA
Source d.f. SS MS F
Blocks 4 37.8 9.4
Treatment 2 73.4 36.7 05.98*
Control Vs Other 1 72.9 78.9 11.88**
C Vs S 1 .5 .5 00.08
Error 8 49.1 6.1
Total 14 160.2
Conclusions:
1.
2.
3.