Clinical Chemistry Notes Without Blanks Legit
Clinical Chemistry Notes Without Blanks Legit
MTAP
CHEMISTRY
BY: GEORGE VINCENT GELLENA, RMT Table 1. – Types of Error
Remedios Trinidad Romualdez Medical Foundation
CONTENTS:
1 Quality Management
Automation Random Error Systematic Error
2 Carbohydrates Description
4 Lipids
7 Proteins Error which varies Error that influences
Enzymes from sample to observations
10 Non-Protein Nitrogens sample consistently in one
12 Liver Function Tests direction
16 Electrolytes
Acid-Base Balance
18 Endocrinology Examples
20 Therapeutic Drug Monitoring
23 Toxicology -Mislabeling of sample
-Pipeting error -Deterioration of rgts.
24 -Temperature & ctrl materials
30 Fluctuations -Contaminated sol'ns
32 -Improper mixing of -Failing Instruments
samples and rgts.
QUALITY MANAGEMENT
Statistics
Quality Control - Is a system of ensuring accuracy
& precision in the laboratory by including quality control
Mean – measure of central tendency;
reagents in every series of measurements measure of accuracy; AVERAGE
Quality Assurance - is a systematic action necessary
Standard Deviation – measure of dispersion of
to provide adequate confidence that laboratory services
values from the mean; measure of precision; most
will satisfy the given medical needs for patient care
frequently used measure of variation
Standard – material of kno Coefficient of Variation - index of precision; percentile
concentrati used in developing a standard curve expression of the mean
and/or instrument calibration Variance - measure of variability
Control – sample of known quantity F-test - determines whether there is a
with
several analytes present
statistically significant difference between the standard
Parameters
Sensitivity - Is the Ability of an analytical deviations of two groups of data
method to give repeated results on the same sample Range - is the difference between the
that
agree with one another highest and lowest score in data
Practicability - The degree by w/c a method is Quality Control Charts
Gaussian Curve - data element are centered
easily
Reliability around the mean with most elements close to the mean
- The ability of an analytical
method to CUSUM - provides the earliest
maintain accuracy & precision over an
period of time w/c equipment, indication of systematic error (trend); requires computer
extend duri
reagents, & personnel may change implementation
Diagnostic Youden/ Twin Plot – compare results obtained on
Sensitivity - The Ability of an analytical
method to detect the proportion of individuals with the a high and low control serum from different laboratories
disease. (Screening tests require high sensitivity) Shewhart Levey- – most widely used QC
Jennings
Diagnostic - The Ability of an analytical chart in the clinical laboratory; allows laboratorians to
Specificity
method to detect the proportion of individuals without apply multiple rules without the aid of computer;
the disease. (Confirmatory tests require high specificity) identifies both random and systematic error
Clerical Error – highest frequency occurs with Table 2. Errors observed in LJ Chart
the use of handwritten labels and request forms TREND SHIFT
Gradual change in Abrupt change in the
the mean mean
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Ctrl value increase or Ctrl values distribute
Clinical Chemistry
AUTOMATION
Automation
Wavelength – distance between two successive peaks
400-700 nm – visible spectrum
<400 nm – ultraviolet region (UV)
>700 nm – infrared region
Didymium or holmium oxide filter is used to check
wavelength accuracy
Neutral density filters and dichromate solution verify Double Beam in Space_. A, Exciter lamp;
absorbance accuracy B, mirror; C, entrance slits; D, monochromators; E,
Beer-Lambert’s law
exit slits; F, cuvets; G, photodetectors; H, light-
A = abc = 2 – log%T
emitting
o A: molar absorptivity
diode (LED).
o B: length of light through the solution
2. Double Beam in Time – 1 photodetector
o C: concentration of absorbing molecules
and 1 chopper or rotating sector mirror
o T: transmittance
One-point calcuation or calibration
𝐶𝑜𝑛. 𝑜𝑓 𝑆𝑡𝑎𝑛𝑑𝑎𝑟𝑑 (𝐶𝑠) 𝐶𝑜𝑛𝑐. 𝑜𝑓 𝑢𝑛𝑘𝑛𝑜𝑤𝑛 (𝐶𝑢)
=
𝐴𝑏𝑠. 𝑜𝑓 𝑆𝑡𝑎𝑛𝑑𝑎𝑟𝑑 (𝐴𝑠) 𝐴𝑏𝑠. 𝑜𝑓 𝑢𝑛𝑘𝑛𝑜𝑤𝑛 (𝐴𝑢)
SPECTROPHOTOMETRY
ELECTROPHORESIS
DENSITOMETRY
Chemiluminiscence
Measures absorbance of
Scans and quantitates electrophoretic pattern; Chemical reaction yields electronically excited
measures concentration of dye and protein fraction compound that emits light as it returns to its ground
state
ISOELECTRIC FOCUSING Emission of light is created from a chemical or
electrochemical reaction; usually used in immunoassays
Migration through a pH gradient
*pH gradient – created by adding acid to anodic area
OSMOMETRY
and base to the cathode area
Ideal for separating proteins of identical sizes but with Based on measuring changes in colligative properties of
different net charges; detects CSF oligoclonal banding solutions
Freezing-point depression osmometry – most
CHROMATOGRAPHY commonly used method
Separation of soluble components based on physical
and chemical characteristics
LABORATORY TESTS
Random Blood Sugar
Blood Glucose taken any time of the day and without
any fasting
Requested during insulin shock and hyperglycemic
ketonic coma
Fasting Blood Sugar
Measure of over-all glucose homeostasis
Requirement: non-per orem (NPO) at least 8 hours
before the test
Oral Glucose Tolerance Test (OGTT)
determines how well the body metabolizes glucose;
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Clinical Chemistry
GLYCOSYLATED HEMOGLOBIN (HbA1c)
Reliable method in monitoring long-term glucose control
Reflects average blood glucose level over the
previous 2- 4 months
Specimen: Whole Blood
Methods: Electrophoresis, Immunoassay, HPLC, and
Affinity Chromatography
For every 1% change in HbA1c, 35 mg/dL is
added to plasma glucose
Table 5. Glucose Test Categories in mg/dL
NORMAL IMPAIRED/ DIAGNOSTIC
HIGH RISK FOR DM
FBS 70-100 100-125 =>126
OGTT <140 140-199 =>200
HbA1c (%) <5.7 5.7-6.4 >6.5
Fructosamine (Glycosilated Protein)
Short term glucose control (3 – 6 weeks)
Monitoring DM individuals with Chronic Hemolytic
Anemia and Hb variants
IgG: most abundant in plasma and lymph uses serum treated with tungstic acid to form a protein
IgA: main antibody found in secretions free filtrate
reagent: H SO
2 4
IgM: first antibody that appears in response to antigenic
end product: ammonia
stimulation
IgD: present mostly on the surface of B cells Biuret
IgE: antibody associated with allergic and anaphylactic most widely used method
reactions requires at least 2 peptide bonds and an alkaline medium
C-Reactive Protein (CRP) Reagents:
general scavenger molecule; binds to the C- Rochelle Salt Alkaline CuSO4 NaOH K
polysaccharide of the pneumococcus Principle: Cupric ions complex the group involved in the
cardiac marker: early warning for persons at risk for peptide bond forming a which is
violet-colored
coronary artery disease to Plasma Protein
inflammatory marker: reflect severity of CHD
rapid test for presumptive diagnosis of bacterial versus
viral infection
MISCELLANEOUS PROTEINS
Myoglobin
small heme protein found in skeletal and cardiac
muscles that transports and stores oxygen from
hemoglobin to intracellular respiratory enzymes of
contractile cells
higher affinity for oxygen than does hemoglobin
marker for chest pain (angina) and early detection of
acute myorcardial infarction (AMI)
Rises at 1 – 3 hrs; Peaks at 5 – 12 hrs; Returns to normal
in 18 – 30 hrs
TROPONINS
1. similar compounds
Active site - is a water-free activity, where the substrate
Placental - Intestinal - Liver - Bone
interacts with particular charged amino acid residues
Heat stability is determined by heating serum at 56C for
2. Allosteric site - is a cavity other than the active site
10 – 15 minutes
When bound tightly to the enzyme, the coenzyme is
Bone – most heat stable of
called a prosthetic groups
all the normal ALP isoenzymes
Apoenzyme (enzyme portion) and coenzyme forms
Regan ALP – most heat stable among all the types of ALP
a complete and active system known as
CHEMICAL INHIBITION
holoenzyme (apoenzyme + prosthetic group =
holoenzyme) Placental and intestinal ALPs are inhibited by
Digestive enzyme in its inactive form originally phenylalanine reagent and 3M urea inhibits bone ALP
secreted from the organ of production is called a Levamisole inhibits both liver and bone ALP
proenzyme or zymogen
ENZYME THEORY
using ammonium ions formed from urea are CHEMICAL (DIRECT JAFFE)
measur 1.
Folin Wu
Initial Reaction: Urea (derived from jack bean meal) Sensitive but non-specific method
converts urea to ammonium ions and carbonate ions 2.
Lloyd or Fuller’s Earth Method
Secondary Reactions: Quantifies ammonium that Adsorbent:
form after the initial reaction o Lloyd – sodium aluminum silicate
Nesslerization o Fuller's Earth – aluminum magnesium
o Reagents: KI, HgI silicate
o Products measured: Yellow-orange colloid KINETIC JAFFE
(Ammonium dimercuric iodide) Principle: Serum is mixed with alkaline picrate solution
Berthelot and the rate of change in absorbance is measured
o Reagents: NaOCl, phenol, sodium nitroprusside between 2 points
o NaOCl chlorinates ammonia into
Jaffe Reagent: Satd picric acid & 10% NaOH
monochloramine; monochloramine reacts with
popular, inexpensive, rapid and easy to perform
phenol to form indophenol (blue or green) ENZYMATIC METHOD
o Reaction is maintained at alkaline pH (>10.0)
1. Creatinine aminohydrolase – CK
with sodium nitroprusside acting as catalyst enzymes used: creatinine aminohydrolase,
o Product measured: indophenol at 630 – 660
creatinine kinase, pyruvate kinase and lactate
nm
dehydrogenase
GLDH-coupled 2. Creatinase – Hydrogen peroxide method
o Ammonia + 2-oxoglutarate + NADH + GLDH ->
potential to replace Jaffe method (specific than
NAD + Glutamate + Water
Jaffe method)
o Measurement of decrease in absorbance at
enzymes: Creatininase (creatinine aminohydrolase),
340 nm
creatinase, sarcosine oxidase, peroxidase
Conductimetric CLINICAL SIGNIFICANCE
o Conversion of unionized urea into ammonium
and bicarbonate ion; measure increase in AZOTEMIA
conductivity rate 1. Pre-Renal (slow flow of blood to
Indicator Dye diminished glomerular filtration with normal renal
o Color change; used in dry reagent strips function
CLINICAL SIGNIFICANCE cause: dehydration, shock, congestive heart failure
2. Renal
DECREASED BUN LEVELS
damaged within the
Decreased protein intake
acute/chronic renal disease, glomerulonephritis
Liver disease
3. Post-Renal
Vomiting and Diarrhea
usually the result of urinary tract obstruction
Pregnancy VALUES TO REMEMBER
UREMIA VS AZOTEMIA
Azotemia – refers to
increa Reference Value: M = 0.6 – 1.2 mg/dL; F = 0.5 – 1.1 mg/dL
particularly urea in blood Conversion factor: (mg/dL to mmol/L) = 88.4
NP
Uremia – increase in NPNs in URIC ACID
blood; defined as increase in NPNs with of CHARACTERISTIC
organ involvement such as renal failure
VALUES TO REMEMBER major end product of purine catabolism
final breakdown of nucleic acid catabolism in humans
Reference Value: 7 – 18 mg/dL
formed from xanthine by the action of xanthine oxidase
Conversion Factor: mg/dL to mmol/L = 0.357
in the liver and intestine
Urea Concentration: BUN x 2.14
filtered by the glomerulus but 40% of uric acid is
CREATININE
CHARACTERISTIC
end product of muscle catabolism reabsorbed in the kidneys
METHODOLOGIES
not affected by protein diet; not easily removed by
dialysis CHEMICAL (CARAWAY/HENRY METHOD)
Reagent: Phosphotungstic acid (PTA)
Reaction: Uric Acid + PTA -> Tungsten blue + Allantoin
Index of Overall Renal Function; used to
most important thyroid function test – best method for to prevent hypocalcemia (regulates blood calcium)
detecting clinically significant thyroid dysfunction preserve calcium and phosphate within normal range
promotes bone resorption – release calcium in
most clinically sensitive assay in the detection of primary the bloodstream
thyroid disorders increases renal calcium reabsorption
REVERSE T3 (rT3) stimulates conversion of inactive vitamin D to activated
formed from the removal of one iodine from the inner vitamin D3
ring of T4 HYPERPARATHYROIDISM
rd
3 major circulating thyroid hormone Primary Hyperparathyroidism
FREE THYROXINE INDEX (FTI OR T7) physiologic defect lies within the parathyroid gland
indirectly assesses the level of T4 in the blood most common cause of hypercalcemia
FTI = TT4 x THBR due to the presence of a functioning parathyroid
FTI = TT4 𝑇3𝑈 (%)
adenoma
x 100
TOTAL T3 (TT3), FREE T3 (FT3) AND FREE T4 (FT4) Secondary hyperparathyroidism
used to differentiate drug-induced TSH elevation and develops in response to decreased calcium
hypothyroidism diffuse hyperplasia of all 4 glands
the value of TT3 or FT3 is in confirming hyperthyroidism Tertiary hyperparathyroidism
T3 UPTAKE phosphate levels are normal to high; calcium
measures the number of available binding sites of the phosphates precipitate in soft tissues
thyroxine-binding proteins (TBG)
does not measure the level of T3 in serum but it reflects
the serum level of TBG
major site of steroid hormone production confirmatory test: Insulin tolerance test
Table 41. Adrenal Cortex Layers – gold
Layer Function standard for secondary and tertiary hypocortisolism
Overnight metyrapone test – alternative diagnostic or
Zona glomerulosa (Outer
confirmatory test for seconda
10%)
ry or tertiary adrenal insufficiency
Zona fasciculata (Middle
Primary hypocorticolism (primary adrenal insufficiency)
75%)
due to decreased cortisol production – 90%
Zona reticularis (Inner 10%)
destruction of adrenal cortex
disorder: Addison’s disease – hypotension,
hyponatremia, hyperkalemia, weight loss,
CORTISO
hyperpigmentation
is the principal glucocorticoid
Secondary hypocorticolism (secondary adrenal
mostly bound to glycoprotein – transcortin insufficiency)
stimulates gluconeogenesis in the liver resulting in due to hypothalamic-pituitary insufficiency with
hyperglycemia loss of ACTH
is the only adrenal hormone that inhibits the secretion absence of hyperpigmentation
of ACTH
highest level and
results in the deficiency of enzymes necessary for the
lowest at night
synthesis of cholesterol which will result to decreased
specimen: serum (red top), urine; blood sample should
plasma cortisol and increased ACTH and androgen levels
be drawn at 8:00 AM
definitive tests:
urine free cortisol levels are sensitive indicators of
17-OHP measurement in amniotic fluid
adrenal hyperfunction (endogenous hypecorticolism) –
Genotyping cells from chorionic villous sampling –
24 hour urine collection
preferred
Table 42. Cortisol Urinary Metabolites
ALDOSTERONE
Method Reagent
17- Phenylhydrazine most potent mineralocorticoid (electro-regulating
hydroxycorticosteroid in H2SO4 + hormone)
alcohol helps regulate water and electrolytes (sodium, chloride
17-ketogenic steroids Meta- and potassium) and blood pressure
dinitrobenzene acts on renal tubular epithelium to increase retention of
Na+ and Cl- and excretion of K+ and H+
Hypercortisolism (Cushing’s syndrome) method: RIA and chromatography
caused primarily by excessive production of cortisol and
ACTH but decreased aldosterone and renin
principal androgen hormone in the blood – most potent produced by the trophoblast cells of the placenta during
male androgen pregnancy
synthesized by the Leydig cells of the testis of the male; same α-subunit as LH, FSH and TSH; similar β-subunit
controlled primarily by the FSH and LH to LH – “LH-like” hormone
function: growth and development of the reproductive intact HCG (α and β) is the predominant form
system, prostate and external ganglia throughout pregnancy
tests for male fertility: semen analysis, testosterone, method: immunometric (sandwich) method – serum
FSH and LH and urine samples
transport proteins: SHBG (60%) and albumin (40%) INHIBIN A
Table 45. Types of Testicular
Reproductive hormone which inhibits FSH activity
Infertility (Hypogonadism) METHODOLOGIES
Testos- FSH & Description/ other Porter-Silber – for 17-OHCS
terone LH information Zimmerman – steroids with 17-keto structure
Pre- Pisano – quantitating metanephrines and
Due to hypothalamic
testicular normetanephrines
or pituitary lesions
(Secondary) Kober – estrogen
May be congenital TESTS FOR MENSTRUAL CYCLE DYSFUNCTION
(e.g. Klinefelter’s
Testicular
syndrome) or TESTS FOR FEMALE INFERTILITY
(Primary)
acquired (e.g.
varicocele)
MARKERS FOR DOWN SYNDROME
Disorders of sperm
Post- Increased:
transport and
testicular Decreased:
function GASTRIN
DEHYDROEPIANDROSTERONE (DHEA)
peptide secreted by the G cells of the antrum of the
principal androgen formed by the adrenal cortex; weak stomach
androgen causes secretion of the HCl by parietal cells in the
ESTROGEN stomach
functions: promotion of breast development, diagnostic marker for Zollinger-Ellison syndrome (islet-
maturation of the external genitalia, deposition of body cell tumor)
fat and termination of linear growth (secondary sexual SEROTONIN (5-HYDROXYTRYPTAMINE)
characteristics in the female) derived from the hydroxylation and decarboxylation of
precursor: acetate, cholesterol, progesterone and tryptophan
testosterone synthesize by argentaffin cells, primarily in the GI tract
FORMS OF ESTROGEN diagnostic marker for carcinoid tumor
1. – most abundant estrogen in post- tests: Ehrlich’s aldehyde test – (+) purple color
menopausal women
2. – most potent estrogen; major THERAPEUTIC DRUG MONITORING
estrogen a quantitative procedure performed for drugs with
most abundant estrogen in pre-menopausal women narrow therapeutic index
transport proteins: albumin (60%), SHBG (38%) the half-life of the drug determines the time to reach
3. – estrogen found in maternal urine the steady-state or average concentration
major estrogen secreted by the placenta during Mixed Function Oxidase (MFO) system: biochemical
pregnancy pathway responsible for the greatest portion of drug
PROGESTERONE metabolism
LITHIUM
Used for treatment of manic-depressive bipolar
disorders
TRICYCLIC ANTI-DEPRESSANTS
Used for treatment of depression, insomnia and
extreme apathy
Major metabolite: desipramine
FLUOXETINE (PROZAC)
Treatment of obsessive-compulsive disorders
BRONCHODILATOR
thoeophylline
Treatment of asthma and chronic obstructive
pulmonary disease
IMMUNOSUPPRESIVE DRUGS
CYCLOSPORINE
For suppression of acute graft-versus-host disease
(GVHD)
Specimen of choice: whole blood