Machine Learning in Detection and Classification of Leukemia Using C NMC - Leukemia
Machine Learning in Detection and Classification of Leukemia Using C NMC - Leukemia
https://doi.org/10.1007/s11042-023-15923-8
Abstract
A significant issue in the field of illness diagnostics is the early detection and diagnosis
of leukemia, that is, the accurate distinction of malignant leukocytes with minimal costs
in the early stages of the disease. Flow cytometer equipment is few, and the methods
used at laboratory diagnostic centers are laborious despite the high prevalence of leu-
kemia. The present systematic review was carried out to review the works intending to
identify and categories leukemia by utilizing machine learning. It was motivated by the
potential of machine learning (machine learning (ML)) in disease diagnosis. Leukemia is
a blood-forming tissues cancer that affects the bone marrow and lymphatic system. It can
be treated more effectively if it is detected early. This work developed a new classifica-
tion model for blood microscopic pictures that distinguishes between leukemia-free and
leukemia-affected images. The general proposed method in this paper consists of three
main steps which are: (i) Image_Preprocessing, (ii) Feature Extraction, and (iii) Classifi-
cation. An optimized CNN (OCNN) is used for classification. OCNN is utilized to detect
and classify the photo as "normal" or "abnormal". Fuzzy optimization is used to opti-
mize the hyperparameters of CNN. It is a quite beneficial to use fuzzy logic in the opti-
mization of CNN. As illustrated from results it is shown that, with the using of OCNN
classifier and after the optimization of the hyperparameters of the CNN, it achieved the
best results due to the enhancement of the performance of the CNN. The OCNN has
achieved 99.99% accuracy with C-NMC_Leukemia dataset.
* Fatma M. Talaat
fatma.nada@ai.kfs.edu.eg
Samah A. Gamel
sgamel@horus.edu.eg
1
Faculty of Artificial Intelligence, Kafrelsheikh University, Kafrelsheikh, Egypt
2
Faculty of Engineering, Horus University, Damietta, Egypt
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1 Introduction
Leukemia is a type of blood cancer that starts in the bone marrow and results in a large
number of abnormal blood cells. These blood cells, often known as blasts or leukemia cells,
are not fully matured. Bleeding, bruising, bone discomfort, weariness, fever, and a higher
risk of infection are all possible symptoms. A shortage of regular blood cells causes these
symptoms. Blood tests or a bone marrow biopsy are usually used to make the diagnosis. The
actual causes of leukemia are unknown to scientists. It appears to be the result of a mix of
environmental and genetic factors. A fundamental concern in the realm of illness diagnostics
is the precise differentiation of malignant leukocytes with low expense in the early stages of
the disease, which is a major difficulty. Flow cytometry equipment is in restricted supply,
and the procedures accessible in laboratory diagnostic centers are time-consuming. Leuke-
mia is the most frequent type of blood cancer in people of all ages, especially youngsters.
Excessive proliferation and immature growth of blood cells cause this abnormal phenom-
enon, which can harm red blood cells, bone marrow, and the immune system. With over
60,000 new cases reported in 2018, leukemia accounts for more than 3.5 percent of all new
cancer cases in the United States. Malignant white blood cells, also known as lymphoblasts,
travel through the bloodstream to other organs such as the spleen, brain, liver, and kidneys,
where they metastasize to vital bodily tissues [2, 13, 23]. On the basis of microscopic pic-
tures, hematologists in cell transplant facilities can differentiate and diagnose various kinds
of leukemia. Some forms of leukemia are easier to identify and distinguish than others if the
slide is properly stained, but determining underlying leukemia requires more technology.
The stained slides of the most frequent kinds of leukemia as illustrated in Fig. 1. Leukemia
is divided into four categories, acute myeloid leukemia (AML) Fig. 1a, acute lymphoblastic
leukemia (ALL) Fig. 1b, chronic myeloid leukemia (CML) Fig. 1c, and chronic lymphocytic
leukemia (CLL) Fig. 1d, as well as a few less frequent kinds.
In general, leukemia research is divided into two categories: clinical or translational
research and basic research. Clinical/translational research focuses on studying disease
in a specific and generally immediately applicable manner, such as testing a new drug in
humans. Basic science research, on the other hand, looks at the disease process from afar,
such as whether a suspected carcinogen can cause leukemic changes in isolated cells in the
laboratory or how the DNA changes inside leukemia cells as the disease progresses. The
findings of basic research studies are generally less immediately useful to people suffering
from the disease. But the speed of detection of the disease leads to avoiding deteriora-
tion of the patient’s health. Researchers, clinicians, and hematologists have traditionally
struggled to make an early diagnosis of leukemia. Lymphocytic enlargement, pallor, fever,
and weight loss are all indications of leukemia, but they can also be signs of other ill-
nesses. Because the symptoms of leukemia are so minor in the early stages, diagnosing it
can be challenging. Although microscopic examination of PBS is the most commonly used
method for a leukemia diagnosis, obtaining and analyzing bone marrow samples is the gold
standard for leukemia diagnosis [3, 23, 29, 42]. Several research studies have used machine
learning (ML) and computer-aided diagnostic approaches for laboratory image analysis in
the last two decades in the hopes of overcoming the limits of a late leukemia diagnosis and
determining its subgroups. In this research, blood smear pictures were evaluated for diag-
nosing, distinguishing, and counting cells in distinct kinds of leukemia [41, 43].
Traditional approaches couldn’t evaluate or uncover patterns in such a massive amount
of data. It has been demonstrated that machine learning is ideally adapted to dealing with
vast amounts of complex data and could prove to be a useful tool in understanding and
combating disease. Traditionally, experienced practitioners assess diagnostic tests and
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a: AM
ML b: AL
LL
c: CML
L d:
d CLL
C L
patient data based on years of medical study and training. However, in a number of tasks,
including initial diagnosis, prognosis estimation, and prediction of treatment problems, as
well as relapse tracking in hematologic malignancies, machine learning algorithms have
recently been demonstrated to be on par with professionals.
Two decades ago, the first studies of ML methods in the diagnosis of hematologic
malignancies were carried out. They began by using flow cytometry to identify leukemic
cells in blood samples and analyzing genetic data to provide the framework for machine
learning methods in the investigation of hematologic malignancies. It is a well-known
branch of artificial intelligence that consists of algorithms and mathematical relationships,
and it has been swiftly used in clinical research. ML allows computers to be programmed
without explicit experience and then learn from it. The results of incorporating these tech-
nologies into medical data processing have been astounding, and they have proven to be
quite effective in illness diagnosis [6, 10, 24]. According to research, ML approaches con-
siderably enhance complex medical decision-making processes in medical image process-
ing by extracting and then assessing the properties of these images [25, 30, 45].
The main contributions of this paper are:
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Image Feature
Classificaon
Preprocessing Extracon
Phase (CP)
Phase (IPP) Phase (FEP) Normal
The remaining work is organized as follows. In Section 2, some of the recent related
work in the detection and classification of Leukemia is presented. In Section 3, the pro-
posed method is presented. Experimental evaluation is provided in Section 4. And in Sec-
tion 5, we conclude this work.
2 Related work
This section discusses a number of studies that have been conducted by researchers. The
literature discusses some of the previous research between (2012-2023). De Oliveira et al.
[22] suggest minor changes to typical neural network topologies to obtain good perfor-
mance in the categorization of malignant leukocytes. The architectures of VGG16, VGG19,
and Xception were the ones that were put to the test. To balance the training and validation
sets, data augmentation was used. Mirroring, rotation, blurring, shearing, and the addition
of salt and pepper noise were among the transformations used. Using a ResNeXt convo-
lutional neural network with Squeeze-and-Excitation modules, Jonas Prellberg et al. [28]
provides a simple yet successful classification method. The technique received a weighted
F1 score of 88.91 percent on the test set in the C-NMC online challenge. The source code
can be found at https://github.com/jprellberg/isbi2019cancer.
Authors in [26] propose the neighborhood-correction algorithm (NCA), which consists
of three major steps: (i) fine-tuning a pre-trained residual network with training data and
producing initial labels and feature maps for test data, (ii) building a Fisher vector for each
cell image based on its feature maps, and (iii) correcting the initial label of each test cell
image using weighted majority voting based on its most similar neighborhood. Supardi
et al. [1] proposed a classification system for acute leukemia that distinguishes between
two types: acute myelogenous leukemia (AML) and acute lymphocytic leukemia (ALL)
(ALL). From image samples, twelve features were manually retrieved. Finally, a K-NN
classifier was employed to categorize the data. Experiments on a database of 1500 photos
yielded an accuracy of 86%.
Kumar et al. [17] presented an automated acute leukemia detection system. The
technique began with noise and blurring in microscopic digital images being pre-
processed. Color, geometric, textural, and statistical characteristics were retrieved
and classified as benign or malignant. The k-nearest neighbor (K-NN) and nave Bayes
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The input blood microscopic images are first transformed into an RGB color model, and
then a number of processes are applied to them at this stage. After that, their dimensions
are set to 227 x 227. Finally, data augmentation is used to compensate for the lack of a
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Table 1 Recent studies in Leukemia classification that uses C-NMC 2019 Dataset
8068
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De Oliveira et al. (2021) [22] Data Augmentation and Convo- This work proposes simple modifications to High memory In this study, the best model achieved
lutional Neural Networks standard neural network architectures to usage, High an F1-score of 92.60%, precision of
achieve high performance in the malignant computa- 91.14%, sensitivity of 94.10%, and
leukocyte classification problem. The tional time specificity of 90.86% for the malig-
tested architectures were VGG16, VGG19, nant class.
and Xception. Data augmentation was
employed to balance the training and
validation sets. Transformations such as
mirroring, rotation, blurring, shearing,
and the addition of salt and pepper noise
were used.
Jonas Prellberg ResNeXt convolutional neural To obtain good performance in the malig- Low efficiency On the test set, the technique was tested
et al. (2020) [28] network with Squeeze-and- nant leukocyte classification challenge, and received a weighted F1-score of
Excitation modules. this paper suggests modest modifications 88.91 percent.
to typical neural network topologies.
Mirroring, rotation, blurring, shearing, and
adding salt and pepper noise were among
the transformations employed.
Yongsheng Pan et al. (2019) [26] Neighborhood-Correction Algo- Authors propose the neighborhood-cor- Complexity, Experiments show that in early test-
rithm (NCA) rection algorithm (NCA), which consists High compu- ing, the suggested NCA achieves a
of three major steps: (i) fine-tuning a tational Cost weighted F1-score of 92.50 percent
pre-trained residual network with train- and a balanced accuracy of 91.73 per-
ing data and producing initial labels and cent, and in final testing, it achieves a
feature maps for test data, (ii) building a weighted F1-score of 91.04 percent,
Fisher vector for each cell image based on ranking first in C-NMC.
its feature maps, and (iii) correcting the
initial label of each test cell image using
weighted majority voting based on its most
similar neighborhood.
Multimedia Tools and Applications (2024) 83:8063–8076
Table 2 Pros and cons of the various algorithms
Algorithm Pros. Cons.
Neural Networks • Effective for both large and small datasets need only less statistical training • High computational cost
[5] • Capable of detecting complex nonlinear relationships between dependent • Network behavior that isn’t described causes issues
and independent variables • Works with numerical data
• Network duration is unknown
• Prone to overfitting
k-NN • There is no need for training • Incapable of handling large datasets
[18] • New data can be added without difficulty • Incapable of handling high dimensions
• It is simple to deploy • Expensive computation
• Requires feature scaling
Multimedia Tools and Applications (2024) 83:8063–8076
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large dataset, which is necessary for deep neural networks to complete their training and
testing phases. Translation, reflection, and rotation are the three operations that make up
data augmentation. The images are shifted along the X-and Y-axes in translation, with
selected values randomly bound by the interval [1, 9, 17, 19–22, 26–28, 31]. The images
are mirrored along the vertical axis during the reflection process. Finally, the photos are
rotated right or left with a random rotation angle of values bounded by the interval [21–25]
with a step equal to five during the rotation process.
CNN is one of the most common network designs used in machine-learning applications.
The capacity of CNNs to complete tasks regardless of tilting, translation, or scaling is the
major reason for their success [44]. Convolutional, pooling, and fully connected layers are
the three primary types of layers in the CNN architecture, as depicted in Fig. 3. Convolu-
tional layers compute the output of neurons by adding the bias to the weighted sum and
using a rectified linear unit as an activation function (ReLu).
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Input:
o HPT containing initial values for the hyperparameters of CNN.
Output:
o The optimal values for the hyperparameters.
Steps:
1: Initialize gbest and lr (gbest=Vi and lr=lr0)
2: Collect data from HPT
3: Add a loop between values in HPT
4: calculate the Fitness Value (FVi) using Fuzzy Logic via the three parameters stored in HPT.
5: compare the value of FVi if its greater than gbest it will perform gbest= FVi and lr=lri
6: Update the HPT
7: Assign the new values to the HPT
The following data identify the primary components of the computer system used for the
simulation tests. Although the actual hardware may alter the overall completion time for
a simulation, it should have little, if any, impact on the simulation outcomes. In contrast,
for completeness and to allow this study to be duplicated for future comparison, the fol-
lowing is a summary of the most important components. Intel FX6300 9-core processor
at 6.5GHz, Memory: 64 GB DDR3 RAM divided into two 32GB banks4 terabyte sata3
physical drive, 64-megabyte cache capacity. Windows 10 64-bit with Service Pack 1 is the
operating system that we used. Nota bene: Windows 11 was accessible as "upgrades" dur-
ing the research period. They were denied in order to ensure compatibility and consistency
of operation across the research. The following section describes the implementation of our
model, the experiments conducted, and the used dataset.
4.1 Dataset
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cells, 1219 malignant cells from 13 subjects, and 648 healthy cells from 15 subjects, and
“C-NMC test final phase data” containing 2586 unlabeled cells from 17 subjects. Single-
cell photos of malignant and benign lymphocytes already identified by experienced oncolo-
gists can be found in these folders. A sample of the data set is presented in Fig. 4.
4.2 Data augmentation
The original dataset was unbalanced and, for that reason, data augmentation was employed
to balance the Training and Validation sets. This technique was not applied to the Test
set. Standard image transformation techniques were used, such as mirroring, rotation, and
Gaussian blurring, to produce the augmented images.
We also attempted different augmentation techniques, and it was noticed that shearing
and addition of salt and pepper noise resulted in a better training performance and model
accuracy. An example of these techniques applied to a random image from the dataset can
be seen in Fig. 4. The augmented Training set had 20,000 samples, and the Validation set
has 10,000 samples, as shown in Table 3.
Python code was used to implement the proposed method including OCNN to evaluate
their performance in terms of precision, recall, accuracy, and specificity, which are defined
as shown.
Precision = TP∕ (TP + FP) (1)
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101.00%
100.00%
OCNN
99.00%
CNN
98.00% SVM-Linear
SVM-Gaussian
97.00%
SVM-Cubic
96.00% K-NN
LD
95.00%
DT
94.00%
93.00%
Precision Recall Accuracy Specificity
F1-score
95.00%
94.00%
93.00%
92.00%
91.00%
90.00%
89.00%
88.00%
87.00%
86.00%
OCNN CNN Oliveira et al. Prellberg et al. Pan et al. (2019)
(2021) [22] (2020) [28] [26]
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5 Conclusions
A significant issue in the field of illness diagnostics is the early detection and diagnosis of
leukemia, that is, the accurate distinction of malignant leukocytes with minimal costs in the
early stages of the disease. Flow cytometer equipment is few, and the methods used at labo-
ratory diagnostic centers are laborious despite the high prevalence of leukemia. Leukemia
can be treated more effectively if it is detected early. This work developed a new classifi-
cation model for blood microscopic pictures that distinguishes between leukemia-free and
leukemia-affected images. The general proposed method in this paper consists of three main
steps which are: (i) Image_Preprocessing, (ii) Feature Extraction, and (iii) Classification.
An optimized CNN (OCNN) is used for classification. OCNN is utilized to detect and clas-
sify the photo as "normal" or "abnormal." Fuzzy optimization is used to optimize the CNN
hyperparameters. The use of fuzzy logic in optimization is a quite beneficial. From results,
it is shown that the OCNN as a classifier achieved the best results due to the enhancement
of the performance of the CNN after the optimization of the hyperparameters of the CNN.
In the future work, we can use OCNN [35] to achieve better results as it achieved a good
performance in [7, 8, 11, 12, 32, 33, 36–39]. We can also use correlation methods like [34].
Funding Open access funding provided by The Science, Technology & Innovation Funding Authority
(STDF) in cooperation with The Egyptian Knowledge Bank (EKB).
Declarations
Conflict of interest We wish to confirm that there are no known conflicts of interest associated with this
publication.
Open Access This article is licensed under a Creative Commons Attribution 4.0 International License,
which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long
as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Com-
mons licence, and indicate if changes were made. The images or other third party material in this article
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Multimedia Tools and Applications (2024) 83:8063–8076 8075
are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the
material. If material is not included in the article’s Creative Commons licence and your intended use is not
permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly
from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
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