Amyller - Article2 - Final - Draft PH
Amyller - Article2 - Final - Draft PH
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4 authors, including:
Matti Haukka
University of Jyväskylä
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Abstract
In this study a bifunctional 2-aminoethyl dihydrogen phosphate (AEPH2) was 1H and
31
P NMR characterized in a pH range of 1 to 12 in order to determine the zwitterion
properties in different pH regions in H2O and D2O solutions. NMR was also used to
determine the pH range where AEPH2 exists as a zwitterion. The phosphate group has
two deprotonation points, around pH 1 and 6, while the amino group deprotonates at
pH 11. The zwitterion form of AEPH2 (NH3+-CH2-CH2-OPO3H-) exists as the main
ion between pH 1 and 6 in water solutions and also in the solid state.
1. Introduction
Most molecules have specific signals in the NMR spectrum, depending on the
chemical structure. However, the chemical shift of the signal is affected by ionic
concentration and the pH of the solution they are measured in. Changes in chemical
shift are usually induced by changes in the electronic structure of the molecule or
interaction with a solvent e.g. accepting an electron or proton. These interactions are
usually dependent upon the solution pH and only happen in a specific and narrow pH
range. By monitoring certain signals in NMR as a function of a solution pH it is
possible to pinpoint solvent interactions to a specific pH area, but also to a specific
functional group on a multifunctional compound.
Some multifunctional molecules have functional groups that can either accept or
donate protons, but there are also amphoteric groups that can do both. When a
molecule has functional groups that are capable of donating and accepting protons
there is a chance for the formation of a zwitterion. A zwitterion is a molecule that has
both positively and negatively charged functional groups, but maintains an overall
neutral charge. Zwitterionic structures exist extensively in biological systems such as
amino acids and peptides [1]. One example of such a molecule is the common amino
acid, glycine (NH2-CH2-COOH), which exists as zwitterions in a solid state, water
solution [2], and gas phase. [3] Amino acids have both a proton donating carboxylic
acid group (-COOH) and an electron accepting primary amino group (-NH2). In
neutral aqueous solutions, the amino acid forms a carboxylic acid anion (-COO-) and
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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The formation of zwitterions via proton transfer can happen in many different ways:
through intramolecular proton transfer, proton donation/acceptance via a protic
solvent [5] and intermolecular proton transfer between molecules of a dimeric
complex [6]. With NMR titration, it is possible to track the pH range of actual
zwitterions and to determine the ionic forms in other pH regions. Because protonation
and proton transfer play an important role in biological processes between amino
acids and proteins, the use of proton NMR for the determination of a sample pH has
been studied extensively in biological systems. In biological samples, the pH is
usually tracked with amino acids or simple proteins, e.g. glycine [2, 4], histidine [7],
and carnosine [8], which have pH-dependent reactions and are commonly found in
tissue samples.
Zwitterions containing amino and phosphate groups are much less studied, even
though the interaction between the zwitterionic form of amino acids and phosphate
groups of the DNA strand has been found [9]. Aminophosphate zwitterions are known
to exist in a solid state [10], the phosphate group is known to interact with free
cationic NH3+ groups, [11] and the protons of the phosphate group dissociate easily in
water solutions [12], so it is possible for such zwitterions to exist in water solutions.
The goal of our study was to examine whether the AEPH2 molecule exists in a
zwitterionic form in water solutions and in a solid state. 1H and 31P NMR titration
were carried-out in order to characterize the acid base reactions of this multifunctional
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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aminophosphate, and X-ray diffraction measurement was used to determine the solid
state structure. Special emphasis was placed on the pH range of the three depronation
steps of AEPH2, namely the two deprotonations of phosphate, and the deprotonation
of the NH3+ group.
2. Experimental
2.1. Materials
Ethanol 99.5% (Altia Etax Aa), D2O 99.9% (Aldrich), DCl 99% (Aldrich), NaOD
99.5% (Aldrich), and CDCl3 99.8% (Euriso-Top) were used as received from the
supplier. AEPH2 powder 98% (Aldrich) was recrystallized and filtered from a 1:3
water/ethanol mixture and then crystallized from a supersaturated water solution.
NaOH and H2SO4 solutions were made by dilution from 1.00 M and 5.00 M storage
solutions, respectively. All non-deuterated water used in the research was 18 MΩcm-1
Milli-Q water.
All NMR measurements were made with a Bruker Avance 400 NMR spectrometer
with 64 scans per sample. Delays between pulses were 2 seconds for 1H samples and
10 seconds for 31P samples. The solvent was D2O for the titration samples and CDCl3
for the aminoethanol verification. An airtight capillary tube with 0.03% of TMS
dissolved in CDCl3 was the external standard for the 1H measurements (0.00 ppm)
and 85% orthophosphoric acid was the external standard for 31P measurements
(0.00 ppm).
Single crystal X-ray diffraction was conducted with a Bruker Smart ApexII
diffractometer. A single crystal of AEPH2 was immersed in cryo-oil, mounted in a
nylon loop and measured at 100 K using an X-ray beam wavelength of 0.71073 Å.
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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solutions, in order to make a solution pH 12 and a new NMR sample was taken every
0.5 pH mark between the pH range of 3.5 to 12.
Second, another 10 ml batch of titrations was done with fully deuterated chemicals in
a 0.1M D2O solution of AEPH2. The solution was the divided into two separate
solutions with an initial pH of 3.5. This time the titrations were conducted using a
35 w-% DCl in D2O for a pH range of 1 to 3.5 and a 40 w-% NaOD in D2O for a pH
range of 3.5 to 12 and a new NMR sample was taken every 1.0 pH mark.
The form of AEPH2 in aqueous solution was studied by means of NMR titration. A
potentiometric titration study done earlier [16] on AEPH2 shows two deprotonation
steps, but the compound has three labile protons in the pH range of
1-12. One of the deprotonations occurs at a pH below the measurable range of water-
based potentiometric titrations. A NMR titration method was implemented in order to
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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detect all of the deprotonation steps and to identify the specific functional group
connected with these steps.
The 1H NMR signals of both the CH2 groups on the hydrocarbon chain (Scheme 1.)
were plotted as a function of pH. There was no noticeable difference in chemical
shifts or coupling constants between titrations done with non-deuterated (D2O, NaOH
and H2SO4) and fully deuterated (D2O, NaOD, DCl) titrants. Signal A for the CH2
next to phosphate group is a pseudoquartet resulting from 3J(H-H) coupling and 3J(H-
P) coupling from the phosphate group. Signal B for the CH2 next to the amino group
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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-
B O
A O B
A
H2N P
pH 12.0 O
-
O
A B OH B
O
+ A
H3N P
pH 3.5 O
-
O
A B OH
O B
+ A
H3N P
pH 1.5 -
O
O
PPM 4.2 4.0 3.8 3.6 3.4 3.2 3.0 2.8 2.6
1
Scheme 1. H NMR spectra of AEPH2 measured at 400.13 MHz in D2O at 12.0 pH,
3.5 pH and 1.5 pH.
is a triplet due to 3J(H-H) coupling from the adjacent CH2 group and is transformed
into a broad singlet in acidic conditions due to the increased proton exchange rate
[31]. The 31P NMR signal was also plotted as a function of pH (Figure 2.) to obtain
more direct knowledge of the deprotonations of the phosphate group besides the 1H
NMR signal of CH2 A, which is three bonds away from the phosphorus atom. The
amino protons were not observed with 1H NMR, because the amphoteric nature of the
amino group tends to form hydrogen bonds and it exchanges its protons with the
deuterium of D2O making the 1H signal very broad or completely indistinguishable
[32].
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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4,0
3,0
ppm
2,0
1,0
0,0
1 3 5 7 9 11
pH
Figure 2. The 31P chemical shifts of the phosphate group, measured at 161.97 MHz in
D2O, as a function of pH.
The plotted figures of the 1H and 31P NMR resonances as a function of pH (Figures 3.
and 2.) greatly resemble a regular titration curve of triprotic and diprotic acids,
denoting that there are three different points of deprotonation in the pH range of 1 to
12.
4,2
3,9
3,6
ppm
3,3
3,0
Signal A
Signal B
2,7
1 3 5 7 9 11
pH
Figure 3. The 1H chemical shifts of signals A and B, measured at 400.13 MHz in
D2O, as a function of pH.
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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The first deprotonation point can be found around pH 1, where the phosphate group
-OPO3H2 releases a proton and becomes an ionic -OPO3H- group (AEPH2 pKa1=1.0).
The 31P NMR chemical shift of the phosphate group as a function of pH (Figure 2.)
shows a small equivalent point between pH 1 and pH 2. At pH 1, the 31P chemical
shift of the AEP-species matches closely to the chemical shift at 0.00 ppm of
orthophosphoric acid (H3PO4), which has a similar chemical environment to that of a
fully protonated phosphate ester group (-OPO3H2) in AEPH2. The first deprotonation
of APEH2 agrees well with the pKa1 value of monosubstituted phosphates which is
generally about 1.0 [33]. The amino group is in a -NH3+ state at pH 1, making the
molecule a zwitterion.
Although the pH at this point could be low enough to cause de-esterification of the
alcohol group [34, 35], resulting in the formation of orthophosphoric acid (H3PO4)
and 2-aminoethanol, it is not expected to happen at room temperature in, which these
titration experiments were conducted. Synthesis of phosphate esters usually requires a
high temperature [36] and in the case of AEPH2 a temperature of 110oC is required
[13]. Moreover, de-esterification of phosphates usually requires temperatures above
100oC [33, 37] and 2-aminoethanol was not observed in the samples extracted with
diethylether.
The second deprotonation point is found at pH 5.9 where the ionic phosphate group -
OPO3H- releases its last proton and becomes a -OPO32- group (AEPH2 pKa2=5.9)
while the amino group remains as -NH3+. The deprotonation step can be observed as
the resonance shift of signal A (Figure 3.), but the step is much more noticeable in the
31
P chemical shift of the phosphate group (Figure 2.). A very large change in the
chemical shift of phosphorus can be seen at pH 5.9, which denotes the second
deprotonation of the phosphate group and an equivalent point between -OPO3H- and -
OPO32- forms. Such a large increase in the 31P chemical shift can be explained by the
increased polarization of the P-O bonds [38] that derives from the increased electronic
density of the oxygen atoms after the deprotonation. Due to an increased electron
density surrounding the phosphorus atom, the 31P resonance shifts downfield.
The deprotonation step can also be detected as a change in the 3J(H-P) coupling
constant, which increases from 6.4 Hz at pH 3.5 to 6.9 Hz at pH 8.0 due to a change
in the geometry of the ester bond. With orthophosphoric acid, the pKa3 value is very
high [12] because of the highly covalent nature of the last O-H bond, but in the case
of the AEPH2 the last releasing proton should be compared against the pKa2 value of
the orthophosphoric acid (7.20 [12]) and the pKa2 values of the phosphate esters in
general (6.5 [33]), due to remaining covalent ester bond. These values set the
equivalent point at the neutral zone where the corresponding -OPO3H- to -OPO32-
transition of AEPH2 can be found. Due to the overall negative charge, the molecule
can no longer be considered a zwitterion at this point.
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
Final Draft Antti Myller
The third deprotonation point can be found at pH 11.0, where the amino group
deprotonates from a -NH3+ ion to a neutral -NH2 group (AEPH2 pKa3=11.0). Below
pH 11.0 the -NH3+ is the main species, whereas above pH 11.0 the -NH2 is
predominant. The chemical shift of signal B as a function of pH (Figure 3.) has three
visible equivalent points at pH 1.0, 5.9 and 11.0, exactly the same points as in the case
of the proton signal A. The change in chemical shift at pH 11.0 is considerably larger
than at pH 1.0 and 5.9, indicating the deprotonation of the amino group.
7,0
6,0
Hz
5,0
4,0
3,0
1 3 5 7 9 11
pH
Figure 4. The 1H NMR coupling constant 3J(H-H) as a function of pH.
The chemical shift changes at pH 1.0 and 5.9 in other functional groups are reflected
in signal B as changes in the 3J(H-H) coupling constant (Figure 4.). 3J(H-H) steadily
increases from 4.4 Hz to 5.4 Hz, confirming the alteration of either length of the C-C
bond between the CH2 groups or torsion angle [39] at equivalent points where
deprotonation happens. The changes in the 3J(H-H) coupling constant are rather small
due to a lack of steric hindrance for the rotation around the C-C bond of the
hydrocarbon chain.
Primary amines usually have very high pKa values [40], meaning that -NH2 to -NH-
dissociation will not show in this pH range. This means that a fourth equilibrium point
can be outside the basic end of the pH measuring range and is not visible in plotted
figures of the water solutions.
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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100
80
Rel. Concentration %
NH2
60
NH3+
OPO3 2-
OPO3H-
40 OPO3H2
20
0
0 2 4 6 8 10 12 14
pH
When compared to the results achieved by potentiometric titration of AEPH2 [16] the
pKa values are somewhat different. With potentiometric titration the pKa values set at
5.61 and 10.39 while NMR titration gives out values 1.0, 5.9, and 11.0. In our
previous article [16] the first deprotonation step is missing completely and the last
deprotonation step was incorrectly interpreted as deprotonation of phosphate group
instead of deprotonation of amino group. The notable difference in the pKa values can
be explained by self-buffering properties of AEPH2 solutions. Due to the zwitterionic
nature the AEPH2 is a both weak acid and a conjugate base, simultaneously able to
donate and accept protons in multiple functional groups, this can affect results of
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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potentiometric titration where concentrations are calculated using the consumed titrant
base. In NMR titration the net effect of simultaneous proton donation/acceptance does
not interfere with the observation of equivalent points because they are determined
from the changes in a single functional group.
4. Conclusions
In summary, NMR titration is a very powerful technique for evaluating the acid base
interactions of the functional groups of zwitterions and multifunctional compounds in
general, in a manner that potentiometric titration is unable to provide. The
experimental results indicate that the AEPH2 molecule is indeed in a neutral
zwitterionic form in the solid state and in water solutions at a pH range of between 1
and 5. The maximum zwitterion concentration can be found at pH 2. This study also
reveals the pH ranges in which the phosphate and amino groups deprotonate. This is a
very useful insight for those who wish to conduct specific functionalizations with a
zwitterion compound on solid metal oxide surfaces in a system with limited control
over the pH or who wish to maximize the surface coverage of zwitterions on the
support surfaces.
Supplementary Material
Crystallographic data (excluding structure factors) for structure of AEPH2 has been
deposited with the Cambridge Crystallographic Data Centre, CCDC no. 880620. A
copy of this can be obtained free of charge from The Director, CCDC, 12 Union
Road, Cambridge, CB2 1EZ, UK (fax: +44-1233-336-033; e-mail:
deposit@ccdc.cam.ac.uk; or www: http://www.ccdc.cam.ac.uk).
Acknowledgement
Funding from the Academy of Finland (project 118168) is gratefully acknowledged.
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
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Originally published: Journal of Molecular Structure, Volume 1033, Pages 171–175, 6 February 2013.
Final Draft Antti Myller
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