Brain Tumor Classification Based On Hybrid Approach: Originalarticle
Brain Tumor Classification Based On Hybrid Approach: Originalarticle
https://doi.org/10.1007/s00371-020-02005-1
ORIGINAL ARTICLE
Abstract
Various computer systems have attracted more researchers’ attention to arrive at a qualitative diagnosis in a few times.
Different brain tumor classification approaches are proposed due to lesion complexity. This complexity makes the early tumor
diagnosis using magnetic resonance images (MRI) a hard step. However, the accuracy of these techniques requires a significant
amelioration to meet the needs of real-world diagnostic situations. We aim to classify three brain tumor types in this paper. A
new technique is suggested which provides excellent results and surpasses the previous schemes. The proposed scheme makes
use of the normalization, dense speeded up robust features, and histogram of gradient approaches to ameliorate MRI quality
and generate a discriminative feature set. We exploit support vector machine in the classification step. The suggested system
is benchmarked on an important dataset. The accuracy achieved based on this scheme is 90.27%. This method surpassed
the most recent system according to experimental results. The results were earned through a strict statistical analysis (k-fold
cross-validation), which proves the reliability and robustness of the suggested method.
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to facilitate radiologist’s diagnosis, prognosis, pre-surgical classification outperforms other state-of-the-art methods and
and postsurgical processes, etc. [1, 15]. provide 93.7% as accuracy.
Many attempts have proposed various semiautomatic or Hang et al. [24] suggested a new method for cancer
automatic techniques for brain tumor detection [16–19]. In diagnosis based on gene expression data based on sparse rep-
light of this, a new automatic approach is suggested, which resentations. The proposed scheme is applied to six datasets
categorizes brain tumors into several kinds. It represents a and the results are compared with previous methods. The
challenge compared to traditional methods. Our contribution experimental results have shown that the performance of the
comprises the following key points: proposed technique is more efficient compared to the previ-
ous technique.
• New classification scheme is suggested in aim to classify In order to help the radiologists in MRI classification,
brain tumors (three types). Sachdeva et al. [14] have suggested a semiautomatic clas-
• The impact of using complete MR images is explored, sification scheme that contains varied steps. To detect tumor
where it achieves ameliorated results in multi-class classi- areas, a content-based active contour system that allows the
fication. radiologist to manually indicate the region of interest (ROI),
• The suggested scheme classifies brain tumors into multi- which is saved as a segmented ROI (SROI) is applied in the
class, compared to the traditional methods, which rely on first step. Then, 71 texture and intensity features are extracted
expensive binary classification. using the SROI. Optimal feature selection is performed with
the application of Genetic Algorithm (GA). The last phase
This work is divided into eight sections. Some related classifies the chosen features using two classifier SVM and
works are briefly given in Sect. 2. Section 3 is designated to ANN. The suggested scheme is tested on different datasets.
explain the proposed scheme. The measurements are outlined The first dataset contains 428 MR images and the second
in Sect. 4. Section 5 is provided to introduce the dataset used. includes 260. The first set of images contains six tumors
Section 6 presents the results and Section 7 discussion, and categories such as glioblastoma multiforme, meningioma,
Sect. 8 concludes. astrocytoma, childhood tumor-medulloblastoma, and sec-
ondary tumor-metastatic. The second dataset contains only
three tumor categories, which are AS, MEN, and low-grade
2 Related works glioma. The suggested GA-SVM aims to find a preliminary
probability for tumor category, while GA-ANN aims to con-
It is important to extract image features and classify it in var- firm the accuracy. The performance calculated on the first
ious classes. Generally, the features can be grouped as basic group of images shows that GA-based approach enhanced
or complex [20, 21]. The basic features can include contrast, SVM accuracy to 91.7% while ANN accuracy to 94.9%.
homogeneity, sum entropy, correlation, average, variance, SVM accuracy has raised to 89% and 94.1% for ANN in
entropy, kurtosis, etc. Several complex features are calcu- the second group of images. The results demonstrate that
lated using the basic features [22]. the classifier GA-ANN offered the highest results compared
In the literature, various studies are reported that are to GA-SVM. Besides, the GA-SVM yields the speed, while
dedicated to brain tumor classification. However, multiple GA-ANN yields the accuracy. According to results, the sug-
works are exploited for a binary classification, while a few gested scheme has acceptable performance and can assist
works are founded in multi-class classification. The clas- radiologists in taking a better decision to classify brain
sification approaches are based either on segmentation or tumors.
non-segmentation for the tumor area. We aim in this section Other work is interested in classifying meningioma,
to discuss some approaches. pituitary tumor, and glioma [26]. New capsule network archi-
Several researchers exploit the sparse representation for tecture (CapsNets) for brain tumor classification is proposed
image classification such as [23–25]. to maximize the accuracy result. The suggested architecture
Al-Shaikhli et al. [23] propose a novel approach to multi- extracts different features from segmented images as edges
class brain tumor classification based on sparse coding and and corners and it is tested on a public database, which con-
dictionary learning. This suggested approach exploits topo- tains 3064 MRI images. The segmented and the whole brain
logical and texture features in order to build and learn a images are provided in this dataset. The new architecture con-
dictionary. Three medical datasets are exploited to collect tains convolutional layers with 64 feature maps. The accuracy
50 normal brain cases, 50 cases with brain glioma, 50 cases achieved for proposed CapsNets is about 78% using the
with brain glioblastoma, and 50 cases with brain metastatic whole image and 86.56% using the tumor-segmented region.
carcinoma. In the testing phase, a tenfold cross-validation is Other convolution neural networks (CNN) architecture is
used to evaluate the performance of the classification. Exper- proposed. It contains various convolution and fully connected
imental results demonstrate that the sparse coding-based (FC) layers. The results achieved are about 61.97% for the
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Brain tumor classification based on hybrid approach 109
whole image and 72.13% for the tumor-segmented region. niques are exploited to minimize the computation and extract
According to results, the CapsNet surmount CNN for the the important features as LDA and PCA. The obtained fea-
two types of images. tures are exploited as input to the KNN and SVM classifiers.
A new method is proposed by Liu et al. [27] in the aim The dataset is taken from Harvard Medical School. They con-
to distinguish among primary central nervous system lym- tain glioma, Alzheimer, meningioma, Alzheimer plus visual
phoma (PCNSL) and glioblastoma multiform (GBM). Gabor agnosia, pick, huntington, sarcoma, and normal. For each
wavelet is exploited to detect features from T1 weighted class, ten images are exploited, i.e., a total of 80 images. All
images. Various frequencies and directions are exploited those images have a size equal to 256 × 256 pixels and T2-
on a Gabor wavelet transformation to extract discriminant weighted in the axial plane. The gained accuracy is about
features. The wavelet is utilized to minimize noise in the pre- 98%.
processing phase. SVM classifier is exploited to segment the Caulo et al. [30] suggested a new scheme to classify a
tumor area in the aim to evaluate Gabor texture features. Lin- glioma grade. Three schemes are suggested and evaluated
ear discriminant analysis (LDA) is exploited as a last step. based on 110 images patients with the extraction of histolog-
The result obtained proved that the suggested method can ical features. The highest accuracy achieved is about 95.5%,
distinguish various categories of tumor images with a higher 83.9% of sensitivity and 96.2% of specificity. The use of multi
accuracy rate. parametric sequences generates more information useful in
In order to classify three brain tumor categories (glioma, the classification process.
meningioma, and pituitary tumor), a new scheme is pro- A new technique was proposed by Lin et al. [31] to
posed by Cheng et al. [28]. They use images in T1 modality classify meningioma tumor in a different grade. Grade I
with contrast-enhanced. The public dataset contains 3064 contains the noncancerous, which are slow-growing tumors.
slices from 233 patients acquired from 2005 to 2010 from Grade II contains cancerous and noncancerous tumors. The
China Hospitals. It includes 708 meningiomas, 1426 gliomas, grade III contains cancerous tumors, which can grow quickly.
and 930 pituitary tumors. The augmented ROIs with manual Different features are exploited as contextual and radiolog-
segmentation are used instead of using original ROIs since ical features. No segmentation or preprocessing process is
tumor surrounding tissues can offer such indicative features. performed. In classification step, the authors used multiple
Intensity normalization is realized before segmentation to logistic regression. The proposed scheme is tested using 120
enhance image quality. Numerous features are extracted as private patients MRI images, were 90 with Grade I and 30
intensity histogram, BoW, and GLCM. The extracted features with Grade II or III. They exploited several sequences as
are reduced using LDA. Finally, three classifiers are utilized FLAIR T1 and T2. DWI transformation is utilized to extract
to label the feature, which are SVM, sparse representation- features. The results are acceptable with the exploited dataset.
based classification and K-Nearest Neighbor (KNN). A huge However, this kind of method requires many large dataset to
data size is exploited, and among all the feature technique ensure its validity.
used, the BoW produces the highest results that achieve Deepak et al. [32] suggested a new technique for MRI
91.28%. This technique is effective for the classification brain tumor classification. They exploit the deep transfer
according to the provided results. A manual segmentation learning and the pre-trained GoogLeNet with the aim to
approach is used and such parameters are tuned manually, extract MRI features. Figshare dataset is used to test the
which can restrict the scalability of the suggested system. performance of the proposed method based on fivefold
Other works do not apply any segmentation step for MRI cross-validation. The classification accuracy achieved by this
brain tumor classification. Hemanth et al. [29] used modified model is about 92.3%. This result was further improved to
Neural Network to analyze abnormal brain images. 540 pri- 97.8% and 98% with the use of SVM and KNN, respectively,
vate MR brain images were exploited to test the suggested as a CNN feature classifier. Despite the fewer training sam-
method. The dataset consists of four tumors class which are ples, the suggested technique outperforms all state-of-the-art
namely astrocytoma, meningioma, metastase, and glioma. methods.
The used images are of 256*256 size. A normalization is per- CNN is exploited also by Ahmad et al. [33] with the aim
formed as a preprocessing step. Eight features are acquired to classify MRI brain tumor images. The proposed technique
based on the first-order histogram and GLCM. The suggested uses Discrete Wavelet Transform (DWT) and a CNN model.
method provides promising results that can reach 95% as sen- 510 MRI images are selected from the Figshare dataset in
sitivity, 98% as specificity and 98% as accuracy. order to test the model performance. The experimental results
Kalbkhani et al. [12] used the generalized autoregressive achieve 99.3% as overall accuracy.
conditional heteroscedasticity model to distinguish seven Paul et al. [34] applied three different classifiers: CNN,
brain diseases with normal. With this approach, DWT is cal- fully connected neural network, and random forest in the
culated. The model parameters define the feature vector. A aim to classify MRI brain tumor. CNN provides the highest
normalization process is applied to this vector. Several tech- accuracy rate, which attained 90.26%. The proposed model
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contains various layers as convolutional, MaxPool, and fully method choice is not randomly but through the good experi-
connected. mental results compared to some basic filters as the median.
Abiwinanda et al. [35] investigated the application of CNN The intensity normalization is performed using Eq. (1):
for this dataset and designed seven various neural networks.
The second model provided the highest performance, which MaxNew − MinNew
ImgNew (Img − Min) + MinNew (1)
contains two convolutional and one fully connected layers. Max − Min
This simple model and without any previous segmentation
achieve 98.51% as training accuracy and 84.19% as test accu- where Img and ImgNew are the original and the newest image
racy. successively. The Min and Max represent the low and high
Different preprocessing manners are investigated by Tahir intensity for Img, while MinNew and MaxNew are correspon-
et al. [36] to ameliorate the classification result. They grouped dent to ImgNew .
these techniques into three groups: noise removal, edge
detection, and contrast enhancement. The possible combina- 3.2 Feature extraction
tions are applied to different image sets. The authors affirm
that the combination of various preprocessing techniques is 3.2.1 Dense feature points
more beneficial than applying a single technique. The SVM
classifier was exploited and reported 86% as the highest accu- The DSURF descriptor [38] is a variant of Speeded Up
racy on Figshare dataset. Robust Features (SURF). SURF represents a feature point
Various schemes were presented in the literature for the detector. It is exploited also as a feature point descriptor [39].
classification of brain tumors. It is very essential to analyze Firstly and after key-point identifying, the process defines an
MRI brain images before any surgical resection and it is orientation around this key-point in a circular region. The
important to extract as much information as possible to avoid region is then aligned to an orientation in the aim to extract
pain and time. Different schemes are exploited to extract the SURF descriptor, which can be 64 or 128 dimensions. The
important feature. Most researchers used small datasets to major difference among SURF and DSURF is the technique
examine their proposed approaches. However, we note that of key-point selection. Dense feature points were always sit-
with the increase in dataset size, the accuracy can be declined. uated closely together along a grid with a particular step size.
Several researchers have used various datasets, which limits A feature descriptor was calculated for each key-point. A sig-
the comparison of the performance. A new scheme is sug- nificant feature was gained in this way [40]. Due to the huge
gested to exceed these drawbacks. feature extracted from the image, DSURF is more effective
than SURF when foreknowledge is limited.
New scheme was proposed in the aim to generate an accurate Due to its success in complex problem, HOG has attracted
classification system. The suggested approach is illustrated attention as feature extractor and it has been much exploited
in Fig. 1. Our technique comprises three steps, which are in the literature [41]. HOG feature is generally exploited in
image normalization to enhance image quality, and then we different fields like pedestrian detection [42], object detection
applied DSURF and HoG to extract the important feature. [43, 44], image registration [45], medical image classification
Finally, SVM was exploited as a classifier in the last step. [46, 47], etc. It estimates the number of times the oriented
gradient occurs in a specific area in the image. It identifies
3.1 Intensity normalization the edge information that is useful in classification. With
HOG method, the image was partitioned into connected and
In this study, a hybrid method (DSURF + HoG) is used to small regions named cells. The orientations of the edge or
extract feature. The MRI intensity values are sensitive to the HOG directions for every cell are calculated. The obtained
acquisition conditions. However, it has not a fixed mean- histograms are combined to create the descriptor [48–50].
ing and it varies considerably within or between subjects. The information gained from different regions in an image
Furthermore, owing the intensity variations, all images are is presented as a feature vector. In HOG process, all blocks
normalized through the min–max technique. This normal- create the density of its intensity gradients. The gradients,
ization considered necessary in texture analysis and it is a ∂ f (x, y)/∂ x and ∂ f (x, y)/∂ y, are calculated using, respec-
needed step to preprocess these images [37]. The process tively, Eqs. (2) and (3):
calculates the high (Max) and low (Min) intensity of the
brain image. The image is mapped with new intensity val- ∂ f (x, y) f (x + 1, y) − f (x − 1, y)
ues (MaxNew ,MinNew ) using the min–max technique. This Gx (2)
∂x (x + 1) − (x − 1)
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Brain tumor classification based on hybrid approach 111
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Fig. 2 Some examples of brain tumors: a, b present a glioma in several subjects. c presents a meningioma, and d presents a pituitary tumor from
different subjects [61]
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Brain tumor classification based on hybrid approach 113
Table 2 Brain tumor classification accuracy using different approaches of the model. Table 4 summarizes the classification perfor-
Preprocessing Feature extraction Classifier Accuracy mance of each tumor type.
From Table 4, we note that the proposed model provides
− HoG SVM LIN 86.42 90.83%, 92.66%, and 97.06% as accuracy for Meningioma,
Median filter HoG SVM LIN 86.65 Glioma and Pituitary tumor, respectively. The sensitivity is
Normalization HoG SVM LIN 86.04 another factor of classification performance, which attains,
− DSURF SVM LIN 89.58 respectively, 84.89%, 88.85%, and 96.56%. For all the
Median filter DSURF SVM LIN 89.26 classes, the specificity values are high which means that the
Normalization DSURF SVM LIN 89.58 model correctly recognizing the samples without a specific
− HoG + DSURF SVM LIN 90.11 disease.
Median filter HoG + DSURF SVM LIN 89.78 To further test the new scheme effectiveness, a comparison
Normalization HoG + DSURF SVM LIN 90.27 with several previous methods using the same data has been
(−) indicates that no preprocessing is used made using average accuracy. Table 5 outlines a comparison
of results through the accuracy for various techniques. In
Table 3 Confusion matrix for the suggested technique the new schemes, the deep learning was exploited to classify
three types of tumor.
True/Auto Meningioma Glioma Pituitary
Each one suggested a new architecture to get an acceptable
Meningioma 601 54 53 accuracy result. Here, our suggested scheme provides the
Glioma 154 1267 5 highest accuracy, which reaches 90.27%. The gained results
Pituitary 20 12 898 use a strict statistical analysis (fivefold CV with 10 repe-
titions), which proves the reliability and robustness of the
proposed scheme.
Moreover, the computational time presents another factor
to a classification method evaluation. Here, the time of the test
stage is only considered. A brain MR image of size 512 * 512
needs about 0.27 s as overall computation time, which is
sufficiently fast.
Obtained results using a huge brain dataset proved the
success of the suggested approach. We can believe that the
suggested technique can be generalized also to various MRI
classification. It is proved that the concatenation of two fea-
ture extraction schemes increases the performance.
Several previous works [32] used the deep learning tech-
nique. It provides good accuracy, which attains 98%. The
Fig. 4 Comparison of several classification methods (%) long processing time represents the main disadvantage of this
technique that needs about 2 h 40 min. The proposed method
has a lower time complexity compared to other systems. It
Moreover, to prove the efficacy of the proposed scheme, needs about 0.27 s as overall computation time to classify an
accuracy comparison is made against various classifiers like image with a size of 512 * 512, which is sufficiently fast.
KNN with various values of K, Random Tree (RT), and SVM. Other systems proposed in the literature [28] exploit a
The extracted features are used as the input of these classi- region segmentation for MRI image before using it to the
fiers. Fivefold cross-validation was exploited in the aim to proposed method. The suggested technique uses the whole
validate the classification results. Figure 4 shows that with image and without any segmentation technique.
various values of K, the KNN classifier can reach about 83% Other authors [33–35] select a few images from the orig-
as accuracy. The Rtrees classifier is slightly better efficiency inal dataset with the aim to gain a higher classification
than the KNN classifier and can achieve 84.72% as accu- accuracy.
racy. SVM classifier gained the best accuracy, which attains Due to the various operations in the CNN layers, the
89.88% for SVM with POLY kernel and 90.27% for SVM DL requires high computational power (GPUs) compared to
with LIN kernel. traditional machine learning which requires a lower com-
Generally, many previous works utilized accuracy to eval- putational cost. In the presence of limited computational
uate model performance. In this study, we have exploited resources (CPU), we exploit the machine learning for brain
other measures like sensitivity, specificity, precision, and F1- tumor classification in this work.
score, in order to have a clear indicator of the generalization
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Table 5 Performance
comparison with several Method Number of images Best accuracy Manual Evaluation method
classification approaches used segmentation
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Brain tumor classification based on hybrid approach 115
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