Physiology 1st Year Complete Notes
Physiology 1st Year Complete Notes
Faisal Razzaq
(Lecturer)
1. Introduction
3. Atoms
4. Components of Atoms
Physiology-A 3
Lecture Contents
6. Ions
7. Polar Molecules
8. Free Radicals
9. References
Physiology-A 4
Learning Objectives
Physiology-A 5
Introduction
Physiology-A 6
Molecules
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Physiology-A 7
Atoms
• The units of matter that form all chemical substances are called atoms.
• Each type of atom—carbon, hydrogen, oxygen, and so on— is called a
chemical element.
• More than 100 elements occur naturally or have been synthesized in
the laboratory, only 24 have been clearly identified as essential for the
function of the human body and are therefore of particular interest to
physiologists.
• The chemical properties of atoms can be described in terms of three
subatomic particles—protons, neutrons, and electrons.
Subject Name 8
Physiology-A 6
Atoms
• The protons and neutrons are confined to a very small volume at the
center of an atom called the atomic nucleus.
• The electrons revolve in orbitals at various distances from the
nucleus. Each orbital can hold up to two electrons and no more.
• An atom is most stable when all of the orbitals in its outermost shell
are filled with two electrons each.
• If one or more orbitals do not have their capacity of electrons, the
atom can react with other atoms and form molecules
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Physiology-A 7
Atoms
10
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Physiology 10
Atoms
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Physiology-A 11
Atoms
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Physiology-A 12
Atoms
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Physiology-A 13
Atoms
• Selenium
• Molybdenum
• Fluorine
• Tin
• Silicon
• Vanadium
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Physiology-A 14
Ions
• Certain atoms may gain or lose one or more electrons, they will then
acquire a net electrical charge and become an ion.
• For example, when a sodium atom (Na), which has 11 electrons, loses
one electron, it becomes a sodium ion (Na+) with a net positive
charge; it still has 11 protons, but it now has only 10 electrons, two in
its first shell and a full complement of eight in its second, outer shell.
• A chlorine atom (Cl), which has 17 electrons, one electron shy of a
full outer shell. It can gain an electron and become a chloride ion (Cl−)
with a net negative charge—it now has 18 electrons but only 17
protons.
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Physiology-A 15
Ions
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Physiology-A 16
Molecules
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Physiology-A 17
Polar Molecules
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Physiology-A 19
Free Radicals
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Physiology-A 21
Free Radicals
Subject Name 22
Physiology-A 22
References
Physiology-A 23
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
Faisal Razzaq
(Lecturer)
2. Solutions
Physiology-A 26
Objectives Of The Lecture
body.
Physiology-A 27
Solutions
Physiology-A 28
Solutions
• Molecular Solubility
• Molecules having a number of polar bonds and/or ionized groups will
dissolve in water. Such molecules are said to be hydrophilic, or
―water-loving.‖
• The presence of ionized groups such as carboxyl and amino groups or
of polar groups such as hydroxyl groups in a molecule promotes
solubility in water.
• Molecules composed predominantly of carbon and hydrogen are
poorly or almost completely insoluble in water because their
electrically neutral covalent bonds are not attracted to water
molecules. These molecules are hydrophobic, or ―water-fearing.‖
Physiology-A 29
Classes Of Organic Molecules
Physiology-A 30
Classes Of Organic Molecules
Physiology-A 31
Classes Of Organic Molecules
Carbohydrates
• Carbohydrates account for only about 1% of body weight, they have a
central contribution in the chemical reactions that provide cells with
energy this energy can be released within cells when required and
stored in the bonds of another molecule called adenosine triphosphate
(ATP).
• The energy stored in the bonds in ATP is used to power many
different reactions in the body, including those necessary for cell
survival, muscle contraction, protein synthesis, and many others.
Physiology-A 32
Classes Of Organic Molecules
Physiology-A 33
Classes Of Organic Molecules
Lipids
• Lipids are molecules composed predominantly of hydrogen and
carbon atoms. These atoms are linked by nonpolar covalent bonds;
therefore, lipids are nonpolar and have a very low solubility in water.
• Lipids, which account for about 40% of the organic matter in the
average body can be divided into four subclasses: fatty acids,
triglycerides, phospholipids, and steroids.
• Like carbohydrates, lipids are important in physiology partly because
some of them provide a valuable source of energy.
• Other lipids are a major component of all cellular membranes, and still
others are important signaling molecules.
Physiology-A 34
Classes Of Organic Molecules
Fatty Acids
• A fatty acid consists of a chain of carbon and hydrogen atoms with an
acidic carboxyl group at one end.
• Fatty acids contain two oxygen atoms in addition to their complement
of carbon and hydrogen.
• Fatty acids are synthesized in cells by the covalent bonding together of
two-carbon fragments, resulting most commonly in fatty acids of 16 to
20 carbon atoms.
• When all the carbons in a fatty acid are linked by single covalent
bonds, the fatty acid is said to be a saturated fatty acid,
Physiology-A 35
Classes Of Organic Molecules
Triglycerides
• Triglycerides constitute the majority of the lipids in the body; these
molecules are generally referred to simply as ―fats.‖
• Triglycerides form when glycerol, a three-carbon sugar-alcohol,
bonds to three fatty acids Triglycerides are present in the and can be
synthesized in the liver.
• They are stored in great quantities in adipose tissue, where they serve
as an energy reserve for the body, particularly during times when a
person is fasting or requires additional energy (exercise, for example).
Physiology-A 36
Classes Of Organic Molecules
Phospholipids
• Phospholipids are amphipathic. In aqueous solution, they become
organized into clusters, with their polar ends attracted to the water
molecules.
• This property of phospholipids permits them to form the lipid bilayers
of cellular membranes.
Steroids
• Examples of steroids are cholesterol, cortisol from the adrenal glands,
and female and male sex hormones (estrogen and testosterone,
respectively) secreted by the gonads.
Physiology-A 37
Classes Of Organic Molecules
Proteins
• Proteins, macromolecules composed primarily of carbon, hydrogen,
oxygen, and nitrogen, are polymers of 20 different amino acids.
• Amino acids have an amino (−NH2) and a carboxyl (−COOH) group
bound to their terminal carbon atom.
• Amino acids are bound together by peptide bonds between the
carboxyl group of one amino acid and the amino group of the next.
• The primary structure of a polypeptide chain is determined by
(1) the number of amino acids in sequence and
(2) the type of amino acid at each position.
Physiology-A 38
Classes Of Organic Molecules
Physiology-A 39
Classes Of Organic Molecules
Nucleic Acids
• There are two classes of nucleic acids, deoxyribonucleic acid (DNA)
and ribonucleic acid (RNA).
• DNA molecules store genetic information coded in the sequence of
their genes.
• RNA molecules are involved in decoding this information into
instructions for linking together a specific sequence of amino acids to
form a specific polypeptide chain.
• Nucleic acids are polymers subunits, nucleotide, has three
components: a phosphate group, a sugar, and a ring of carbon and
nitrogen atoms known as a base because it can accept hydrogen ions
Physiology-A 40
References
Physiology-A 41
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. Cell Organelles
5. Cytoskeleton
Physiology-A 43
Learning Objectives
Physiology-A 44
Introduction
• Cells are the structural and functional units of all living organisms and
make up the tissues and organs .
• Cells are the highly organized, living building blocks of the body. A
cell has three major parts: the plasma membrane, which encloses the
cell; the nucleus, which houses the cell’s genetic material; and the
cytoplasm.
• The cytoplasm consists of the cytosol, organelles, and cytoskeleton.
The cytosol is a gel-like liquid within which the organelles and
cytoskeleton are suspended.
• Organelles are discrete, well-organized structures that carry out
specialized functions. The cytoskeleton is protein scaffolding that
extends throughout the cell and serves as the cell’s ―bone and muscle.‖
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Microscopic Observations Of Cells
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Microscopic Observations Of Cells
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Cell Organelles
Plasma Membrane
• The plasma membrane is a thin membranous structure that encloses
each cell and is composed mostly of lipid (fat) molecules and studded
with proteins.
• Functions of Plasma Membranes
• Regulate the passage of substances into and out of cells and between
cell organelles and cytosol.
• Detect chemical messengers arriving at the cell surface.
• Link adjacent cells together by membrane junctions.
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Cell Organelles
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Cell Organelles
Nucleus
• Almost all cells contain a single nucleus, the largest of the membrane
bound cell organelles.
• A few specialized cells, such as skeletal muscle cells, contain multiple
nuclei, whereas mature red blood cells have none.
• The primary function of the nucleus is the storage and transmission of
genetic information to the next generation of cells.
• This information, coded in molecules of DNA, is also used to
synthesize the proteins that determine the structure and function of the
cell
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Cell Organelles
Physiology-A 51
Cell Organelles
Golgi Apparatus
• The Golgi apparatus is a series of closely apposed, flattened
membranous sacs that are slightly curved, forming a cup-shaped
structure .
• Associated with this organelle, particularly near its concave
surface, are a number of roughly spherical, membrane-enclosed
vesicles.
• Proteins arriving at the Golgi apparatus from the rough endoplasmic
reticulum undergo a series of modifications as they pass from one
Golgi compartment to the next.
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Cell Organelles
Physiology-A 53
Cell Organelles
Endosomes
• A number of membrane-bound vesicular and tubular structures called
endosomes lie between the plasma membrane and the Golgi
apparatus.
• Vesicles that pinch off the plasma membrane travel to and fuse with
endosomes.
• In turn, the endosome can pinch off vesicles that then move to other
cell organelles or return to the plasma membrane.
• Like the Golgi apparatus, endosomes are involved in sorting,
modifying, and directing vesicular traffic in cells.
Physiology-A 54
Cell Organelles
Mitochondria
• Mitochondria (singular, mitochondrion) participate in the chemical
processes that transfer energy from the chemical bonds of nutrient
molecules to newly created adenosine triphosphate(ATP) molecules.
• Mitochondria are spherical or elongated, rodlike structures surrounded
by an inner and an outer membrane.
• Provide most of the energy required to power physiological events
such as muscle contraction, mitochondria also function in the synthesis
of certain lipids, such as the hormones estrogen and testosterone.
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Cell Organelles
Physiology-A 56
Cell Organelles
Lysosomes
• Lysosomes are spherical or oval organelles surrounded by a single
Membrane The fluid within a lysosome is acidic and contains a variety
of digestive enzymes.
• Lysosomes act to break down bacteria and the debris from dead cells
that have been engulfed by a cell.
• They may also break down cell organelles that have been damaged and
no longer function normally.
• They have an especially important function in the various cells that
make up the defense systems of the body.
Physiology-A 57
Cell Organelles
Peroxisomes
• Peroxisomes are moderately dense oval bodies enclosed by a single
membrane peroxisomes consume molecular oxygen, it undergoes
reactions that remove hydrogen from organic molecules including
lipids, alcohol, and potentially toxic ingested substances.
• Peroxisomes are also involved in the process by which fatty acids are
broken down into two-carbon fragments, which the cell can then use
as a source for generating ATP.
Physiology-A 58
Cell Organelles
Vaults
• Vaults are cytoplasmic structures composed of protein and a type of
untranslated RNA called vault RNA (vRNA).
• These tiny structuresbhave been described as barrel-shaped . vaults are
important for transport of molecules between the cytosol and the
nucleus.
• One vault protein is believed to function in regulating a cell’s
sensitivity to certain drugs.
Physiology-A 59
Cytoskeleton
Physiology-A 60
Cytoskeleton
Physiology-A 61
References
Physiology-A 62
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
Physiology-A 64
Learning Objectives
Physiology-A 65
Introduction
• Proteins physically interact with each other and with other molecules
and ions.
• These interactions are fundamental to nearly all physiological
processes, clearly illustrating the general principle of physiology that
physiological processes are dictated by the laws of chemistry and
physics.
• The ability of various molecules and ions to bind to specific sites on
the surface of a protein forms the basis for the wide variety of protein
functions.
Physiology-A 66
Binding Site Characteristics
Ligand
• A ligand is any molecule (including another protein) or ion that is
bound to a protein by one of the following physical forces:
• (1) electrical attractions between oppositely charged ionic or polarized
groups on the ligand and the protein, or
• (2) weaker attractions due to hydrophobic forces between nonpolar
regions on the two molecules.
Physiology-A 67
Binding Site Characteristics
Binding Site
• The region of a protein to which a ligand binds is known as a binding
site or a ligand-binding site.
• A protein may contain several binding sites, each specific for a
particular ligand, or it may have multiple binding sites for the same
ligand.
• The binding of a ligand to a protein changes the conformation of the
protein. When this happens, the protein’s specific function may either
be activated or inhibited.
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Binding Site Characteristics
Physiology-A 69
Binding Site Characteristics
• Chemical Specificity
• The binding between a ligand and a protein may be so specific that a
binding site can bind only one type of ligand and no other.
• Such selectivity allows a protein to identify (by binding) one particular
molecule in a solution containing hundreds of different molecules.
• This ability of a protein-binding site to bind specific ligands is known
as chemical specificity, because the binding site determines the type
of chemical that is bound.
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Binding Site Characteristics
Physiology-A 71
Binding Site Characteristics
• Affinity
• The strength of ligand–protein binding is a property of the binding site
known as affinity.
• The affinity of a binding site for a ligand determines how likely it is
that a bound ligand will leave the protein surface and return to its
unbound state.
• Binding sites that tightly bind a ligand are called high-affinity binding
sites; those that weakly bind the ligand are low-affinity binding sites.
Physiology-A 72
Binding Site Characteristics
• Saturation
• An equilibrium is rapidly reached between unbound ligands in
solution and their corresponding protein-binding sites.
• At any instant, some of the free ligands become bound to unoccupied
binding sites, and some of the bound ligands are released back into
solution. A single binding site is either occupied or unoccupied.
• The term saturation refers to the fraction of total binding sites
that are occupied at any given time.
• When all the binding sites are occupied, the population of binding sites
is 100% saturated.
Physiology-A 73
Binding Site Characteristics
Competition
• More than one type of ligand can bind to certain binding sites. In such
cases, competition occurs between the ligands for the same binding
site.
• The presence of multiple ligands able to bind to the same binding site
affects the percentage of binding sites occupied by any one ligand.
• As a result of competition, the biological effects of one ligand may be
diminished by the presence of another.
Physiology-A 74
Regulation Of Binding Site
Characteristics
There are two ways of controlling protein activity:
(1) changing protein shape, which alters the binding of ligands; and
(2) as described earlier in this chapter, regulating protein synthesis and
degradation, which determines the types and amounts of proteins in a
cell.
The two mechanisms found in cells that selectively alter protein shape
are known as allosteric modulation and covalent modulation, though
only certain proteins are regulated by modulation.
Physiology-A 75
Regulation Of Binding Site
Characteristics
• Allosteric Modulation
• Whenever a ligand binds to a protein, the attracting forces betweenthe
ligand and the protein alter the protein’s shape.
• For example, as a ligand approaches a binding site, these attracting
forces can cause the surface of the binding site to bend into a shape
that more closely approximates the shape of the ligand’s surface.
• When a protein contains two binding sites, the noncovalent binding of
a ligand to one site can alter the shape of the second binding site and,
therefore, the binding characteristics of that site. This is termed
allosteric modulation
Physiology-A 76
Regulation Of Binding Site
Characteristics
• Covalent Modulation
• The second way to alter the shape and therefore the activity of a
protein is by the covalent bonding of charged chemical groups to some
of the protein’s side chains. This is known as covalent modulation.
• In most cases, a phosphate group, which has a net negative charge, is
covalently attached by a chemical reaction called phosphorylation, in
which a phosphate group is transferred from one molecule to
another.
Physiology-A 77
Regulation Of Binding Site
Characteristics
Physiology-A 78
References
Physiology-A 79
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3 Chemical Reactions
4 Enzymes
5. Multienzyme Reactions
Physiology-A 81
Learning Objectives
Physiology-A 82
Introduction
• This section, include some of the major functionsof proteins,
specifically those that relate to facilitating chemical
reactions.Thousands of chemical reactions occur each
instantthroughout the body; this coordinated process of chemical
change is termed metabolism.
• Metabolism involves the synthesis and breakdown of organic
molecules required for cell structure and function and the release of
chemical energy used for cell functions.
• The synthesis of organic molecules by cells is called anabolism, and
their breakdown, catabolism.
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Chemical Reactions
Physiology-A 84
Chemical Reactions
Physiology-A 85
Chemical Reactions
Physiology-A 86
Enzymes
• Enzymes are protein molecules, an enzyme can be defined as a
biological catalyst. ( some RNA molecules possess catalytic activity,
the number of reactions they catalyze is very small).
• To function, an enzyme must come into contact with reactants, which
are called substrates in the case of enzyme-mediated reactions.
• Two models have been proposed to describe the interaction of an
enzyme with its substrate(s). In one,
• the enzyme and substrate(s) fit together in a ―lock-and-key‖
configuration.
• In another model, the substrate itself induces a shape change in the
active site of the enzyme, which results in a highly specific binding
interaction (―induced-fit model‖)
Physiology-A 87
Enzymes
Physiology-A 88
Enzymes
Cofactors
• Many enzymes are inactive without small amounts of other substances
known as cofactors.
• In some cases, the cofactor is a trace metal, such as magnesium,
iron, zinc, or copper. Binding of one of the metals to an enzyme alters
the enzyme’s conformation so that it can interact with the substrate;
this is a form of allosteric modulation.
• In other cases, the cofactor is an organic molecule that directly
participates as one of the substrates in the reaction, in which case the
cofactor is termed a coenzyme.
Physiology-A 89
Enzymes
respectively.
Physiology-A 90
Regulation Of Enzyme-mediated Reaction
Substrate Concentration
• Substrate concentration may be altered as a result of factors that alter
the supply of a substrate from outside a cell.
• For example, there may be changes in its blood concentration due to
changes in diet .
• Intracellular substrate concentration can also be altered by cellular
reactions that either utilize the substrate, and thus decrease its
concentration, or synthesize the substrate, and thereby increase its
concentration.
• The rate of an enzyme-mediated reaction increases as the substrate
concentration increases.
Physiology-A 91
Regulation Of Enzyme-mediated Reaction
• Enzyme Concentration
• At any substrate concentration, including saturating concentrations,
the rate of an enzyme-mediated reaction can be increased by
increasing the enzyme concentration.
• In most metabolic reactions, the substrate concentration is much
greater than the concentration of enzyme available to catalyze the
reaction.
• If the number of enzyme molecules is doubled, twice as many active
sites will be available to bind substrate and twice as many substrate
molecules will be converted to product
Physiology-A 92
Regulation Of Enzyme-mediated Reaction
• Enzyme Activity
• A change in enzyme activity occurs when either allosteric or covalent
modulation alters the properties (for example, the structure) of the
enzyme’s active site.
• Such modulation alters the rate at which the binding site converts
substrate to product, the affinity of the binding site for substrate, or
both.
• The modulator molecules that allosterically alter enzyme activities
may be product molecules of other cellular reactions. The result is that
the overall rates of metabolism can adjust to meet various metabolic
demands.
Physiology-A 93
Regulation Of Enzyme-mediated Reaction
Physiology-A 94
Multienzyme Reactions
Physiology-A 95
Multienzyme Reactions
Physiology-A 96
References
Physiology-A 97
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3 ATP
5. Carbohydrate Metabolism
Physiology-A 99
Learning Objectives
Physiology-A 100
Introduction
Physiology-A 101
ATP
Physiology-A 102
ATP
Physiology-A 103
ATP
Among other things, the energy derived from the hydrolysis of ATP is
used by cells for
(1) the production of force and movement, as in muscle contraction;
(2) active transport of molecules across membranes; and
(3) synthesis of the organic molecules used in cell structures and
functions.
Physiology-A 104
Cellular Energy Transfer
• Glycolysis
• Glycolysis (from the Greek glycos, “sugar,” and lysis,
“breakdown”) is a pathway that partially catabolizes carbohydrates,
primarily glucose.
• It consists of 10 enzymatic reactions that convert a six-carbon
molecule of glucose into two three-carbon molecules of pyruvate, the
ionized form of pyruvic acid
Physiology-A 105
Cellular Energy Transfer
• Krebs Cycle
• The enzymes for this pathway are located in the inner mitochondrial
Physiology-A 106
Cellular Energy Transfer
Physiology-A 107
Cellular Energy Transfer
Oxidative Phosphorylation
• The energy transferred to ATP is derived from the energy released
when hydrogen ions combine with molecular oxygen to form water.
• The hydrogen comes from the NADH + H+ and FADH2 coenzymes
generated by the Krebs cycle, by the metabolism of fatty acids (see the
discussion that follows), and—to a much lesser extent—during
glycolysis. The net reaction is
• 1/2 O2 + NADH + H+___________ H2O + NAD+ + Energy
Physiology-A 108
Cellular Energy Transfer
Physiology-A 109
Carbohydrate Metabolism
Physiology-A 110
Carbohydrate Metabolism
• Glycogen Storage
• A small amount of glucose can be stored in the body to provide a
reserve supply for use when glucose is not being absorbed into the
blood from the small intestine.
• Glucose Synthesis
Glucose can be synthesized in the liver and to a lesser extent the
kidneys from intermediates derived from the catabolism of glycerol (a
sugar alcohol) and some amino acids. This process of generating new
molecules of glucose from noncarbohydrate precursors is known as
gluconeogenesis.
Physiology-A 111
Carbohydrate Metabolism
Physiology-A 112
References
Physiology-A 113
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
3. Fat Metabolism
5. Essential Nutrients
Physiology-A 115
Learning Objectives
Physiology-A 116
Fat Metabolism
• Fat Catabolism
• Triglyceride (fat) consists of three fatty acids bound to glycerol . Fat
typically accounts for approximately 80% of the energy stored in the
body .
• Under resting conditions, approximately half the energy used by
muscle, the liver, and the kidneys is derived from the catabolism of
fatty acids.
• The breakdown of a fatty acid is initiated by linking a molecule of
coenzyme A to the carboxyl end of the fatty acid. This initial step is
accompanied by the breakdown of ATP to AMP and two Pi.
Physiology-A 117
Fat Metabolism
• The coenzyme-A derivative of the fatty acid then proceeds through a series
• Which splits off a molecule of acetyl coenzyme A from the end of the fatty
acid and transfers two pairs of hydrogen atoms to coenzymes (one pair to
FAD and the other to NAD+). The hydrogen atoms from the coenzymes
Physiology-A 118
Fat Metabolism
Physiology-A 119
Fat Metabolism
• Fat Synthesis
• The synthesis of fatty acids occurs by reactions that are almost the
reverse of those that degrade them.
• The enzymes in the synthetic pathway are in the cytosol, whereas the
enzymes catalyzing fatty acid breakdown are in the mitochondria.
• Once the fatty acids are formed, triglycerides can be synthesized by
linking fatty acids to each of the three hydroxyl groups in glycerol,
more specifically, to a phosphorylated form of glycerol called glycerol
3-phosphate.
• The synthesis of triglyceride is carried out by enzymes associated
with the membranes of the smooth endoplasmic reticulum.
Physiology-A 120
Protein And Amino Acid Metabolism
Physiology-A 121
Protein And Amino Acid Metabolism
• Oxidative Deamination
• If there are more amino acids than are needed for protein synthesis, the
amine group from glutamic acid may be removed and excreted as urea
in the urine . The metabolic pathway that removes amine groups from
amino acids—leaving a keto acid and ammonia (which is converted to
urea)—is known as oxidative deamination.
• Once the nitrogen-containing amino group is removed, the remainder
of most amino acids can be metabolized to intermediates capable of
entering either the glycolytic pathway or the Krebs cycle.
Physiology-A 122
Protein And Amino Acid Metabolism
Transamination
• Keto acids can be converted to amino acids by the addition of an
amine (NH 2 ) group. This amine group is usually obtained by
―cannibalizing‖ another amino acid; in this process, a new amino acid
is formed as the one that was cannibalized is converted to a new keto
acid.
• This type of reaction, in which the amine group is transferred from one
amino acid to form another, is called transamination
Physiology-A 123
Protein And Amino Acid Metabolism
Physiology-A 124
Protein And Amino Acid Metabolism
Physiology-A 125
Essential Nutrients
inadequate to keep pace with the rates at which they are broken down
Physiology-A 126
Essential Nutrients
Physiology-A 127
Essential Nutrients
Physiology-A 128
References
Physiology-A 129
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. Genetic Code
4. Protein Synthesis
5. Protein Degradation
Physiology-A 131
Learning Objectives
Physiology-A 132
Introduction
Physiology-A 133
Genetic Code
• For example, the triplets specifying the amino acid tryptophan are the same
• Although the same triplets are used by all living cells, the messages they
Physiology-A 134
Genetic Code
RNA, there are several classes of RNA required for protein synthesis—
• Only messenger RNA directly codes for the amino acid sequences of
proteins, even though the other RNA classes participate in the overall
Physiology-A 135
Protein Synthesis
• Genetic information flows from DNA to RNA and then to protein. The
Process of transferring genetic information from DNA to RNA in the
nucleus is known as transcription.
• The process that uses the coded information in RNA to assemble a
protein in the cytoplasm is known as translation.
• Transcription: mRNA Synthesis
• the two polynucleotide chains in DNA are linked together by hydrogen
bonds between specific pairs of bases: A−T and C−G. To initiate RNA
synthesis, the two antiparallel strands of the DNA double helix must
separate so that the bases in the exposed DNA can pair with the bases
in free ribonucleotide triphosphates.
Physiology-A 136
Protein Synthesis
• The ribonucleotides paired with this strand of DNA are linked by RNA
polymerase to form a primary RNA transcript containing a sequence of
bases complementary to the template strand of the DNA base
sequence.
• RNA splicing removes the intron-derived regions, which contain
noncoding sequences, in the primary RNA transcript and splices
together the exon-derived regions, which encode specific amino acids,
producing a molecule of mature mRNA.
Physiology-A 137
Protein Synthesis
Physiology-A 138
Protein Synthesis
Physiology-A 139
Protein Synthesis
Transfer RNA
• The key to tRNA’s function in protein synthesis is its ability to
combine with both a specific amino acid and a codon in ribosome-
bound mRNA specific for that amino acid.
• This permits tRNA to act as the link between an amino acid and the
mRNA codon for that amino acid.
• A three-nucleotide sequence at the end of one of the loops of tRNA
can base-pair with a complementary codon in mRNA. This tRNA
three-letter code sequence is appropriately known as an anticodon.
Physiology-A 140
Protein Synthesis
Protein Assembly
• The process of assembling a polypeptide chain based on an mRNA
message involves three stages— initiation, elongation, and
termination. The initiation of synthesis occurs when a tRNA
containing the amino acid methionine binds to the small ribosomal
subunit.
• A number of proteins known as initiation factors are required to
establish an initiation complex . Following the initiation process, the
protein chain is elongated by the successive addition of amino acids .
A ribosome has two binding sites for tRNA.
Physiology-A 141
Protein Synthesis
• Site 1 holds the tRNA linked to the portion of the protein chain that
has been assembled up to this point, and site 2 holds the tRNA
containing the next amino acid to be added to the chain
• Following the formation of the peptide bond, the tRNA at site 1 is
released from the ribosome, and the tRNA at site 2—now linked to the
peptide chain—is transferred to site 1.
• The ribosome moves down one codon along the mRNA, making room
for the binding of the next amino acid–tRNA molecule.
• This process is repeated over and over as amino acids are added to the
growing peptide chain .
Physiology-A 142
Protein Synthesis
stop codon) specifying the end of the protein, the link between the
polypeptide chain and the last tRNA is broken, and the completed
Physiology-A 143
Protein Synthesis
Physiology-A 144
Protein Synthesis
Physiology-A 145
Protein Degradation
Physiology-A 146
References
Physiology-A 147
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
2. Protein Secretion
5. Cancer
6. Genetic Engineering
Physiology-A 149
Learning Objectives
Physiology-A 150
Protein Secretion
• Proteins are large, charged molecules that cannot diffuse through the
lipid bilayer of plasma membranes.
• Special mechanisms are required to insert them into or move them
through membranes.
• Proteins destined to be secreted from a cell or to become integral
membrane proteins are recognized during the early stages of protein
synthesis.
• For such proteins, the first 15 to 30 amino acids that emerge from the
surface of the ribosome act as a recognition signal, known as the
signal sequence or signal peptide.
Physiology-A 151
Protein Secretion
Physiology-A 152
Protein Secretion
Physiology-A 153
Protein Secretion
Physiology-A 154
Protein Secretion
• Some of the vesicles travel to the plasma membrane, where they fuse
with the membrane and release their contents to the extracellular fluid,
Physiology-A 155
Protein Secretion
Physiology-A 156
Replication Of Genetic Information
Physiology-A 157
Replication Of Genetic Information
Physiology-A 158
Expression Of Genetic Information
Physiology-A 159
Expression Of Genetic Information
Physiology-A 160
Cancer
• Tumors are described as benign when they are relatively slow growing
and limited to a specific location (warts, for example).
• Malignant tumors grow more rapidly and undergo metastasis, a term
that refers to the dispersion of tumor cells and the resultant seeding
of new tumors in different locations. The term cancer, as it is
generally applied, refers to malignant tumors.
• Cancer is now believed to result from altered expression of oncogenes
(genes that promote cancer), tumor-suppressor genes, and genes that
code for microRNA.
• Oncogenes are altered forms of normal proto-oncogenes, which code
for proteins that control cell division and apoptosis
Physiology-A 161
Genetic Engineering
Physiology-A 162
References
Physiology-A 163
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. Diffusion
4. Mediated-Transport Systems
Physiology-A 165
Learning Objectives
Physiology-A 166
Introduction
Physiology-A 167
Diffusion
Physiology-A 168
Diffusion
Physiology-A 169
Mediated-transport Systems
Physiology-A 170
Mediated-transport Systems
Physiology-A 171
Facilitated Diffusion
Physiology-A 172
Facilitated Diffusion
Physiology-A 173
Active Transport
Physiology-A 174
Active Transport
Physiology-A 175
Active Transport
Physiology-A 176
Active Transport
Physiology-A 177
Active Transport
Physiology-A 178
References
Physiology-A 179
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. Osmosis
4. Endocytosis
5. Exocytosis
6. Epithelial Transport
Physiology-A 181
Learning Objectives
Physiology-A 182
Introduction
Physiology-A 183
Osmosis
Physiology-A 184
Osmosis
Physiology-A 185
Osmosis
186
Subject Name–A
Physiology 186
Endocytosis
• Phagocytosis
• In phagocytosis, cells engulf bacteria or large particles such as
cell debris from damagssues.
• This form of endocytosis, extensions of the plasma membrane
called pseudopodia fold around the surface of the particle,
engulfing it entirely. The pseudopodia, with their engulfed
contents, then fuse into large vesicles called phagosomes that
are internalized into the cell. Phagosomes migrate to and fuse
with lysosomes in the cytoplasm, and the contents of the
phagosomes are then destroyed by lysosomal enzymes and other
molecules.
• Most cells undergo pinocytosis, only a few special types of cells,
such as those of the immune system , carry out phagocytosis.
Subject Name 188
Physiology-A 188
Endocytosis
• Receptor-Mediated Endocytosis
• In contrast to pinocytosis and phagocytosis, most cells have the
capacity to specifically take up molecules that are important for
cellular function or structure.
• In receptor-mediated endocytosis, certain molecules in the
extracellular fluid bind to specific proteins on the outer surface of the
plasma membrane. These proteins are called receptors, and each one
recognizes one ligand with high affinity
• Epithelial cells line hollow organs or tubes and regulate the absorption or
secretion of substances across these surfaces.
• One surface of an epithelial cell generally faces a hollow or fluid-filled tube
or chamber, and the plasma membrane on this side is referred to as the
apical membrane (also known as the luminal membrane) .
• The plasma membrane on the opposite surface rests upon a basement
membrane and is usually adjacent to a network of blood vessels; it is
referred to as the basolateral membrane (also known as the serosal
membrane). The two pathways by which a substance can cross a layer of
epithelial cells are
• (1) the paracellular pathway, in which diffusion occurs between the
adjacent cells of the epithelium; and
Subject Name 193
Physiology-A 193
Epithelial Transport
Physiology-A 196
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
Physiology-A 198
Learning Objectives
Physiology-A 199
Introduction
203
Subject Name–A
Physiology 203
General Characteristics of Homeostatic Control
Systems
• The pathway mediating a reflex is known as the reflex arc, and its
components .
• A stimulus is defined as a detectable change in the internal or external
environment, such as a change in temperature, plasma potassium
concentration, or blood pressure.
• A receptor detects the environmental change. stimulus acts upon a
receptor to produce asignal that is relayed to an integrating center.
• The signal travels between the receptor and the integrating center along
the afferent pathway (the general term afferent means “to carry to,” in
this case, to the integrating center).
• An integrating center often receives signals from many receptors, some of
which may respond to quite different types of stimuli.
• The output of an integrating center reflects the net effect of the total
afferent input; that is, it represents an integration of numerous bits of
information.
• The output of an integrating center is sent to the last component of the
system, whose change in activity constitutes the overall response of the
system. This component is known as an effector.
• The information going from an integrating center to an effector is like a
command directing the effector to alter its activity. This information travels
along the efferent pathway (the general term efferent means ―to carry
away from,‖ in this case, away from the integrating center).
• Almost all body cells can act as effectors in homeostatic reflexes. Muscles
and glands, however, are the major effectors of biological control systems.
Subject Name 211
Physiology-A 211
References
Physiology-A 212
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
Physiology-A 214
Learning Objectives
Physiology-A 215
Introduction
Physiology-A 216
The Role of Intercellular Chemical Messengers in
Homeostasis
• In the second type, the chemical messenger is not actually released from the
cell producing it but rather is located in the plasma membrane of that cell.
• For example, the messenger may be a plasma membrane protein with part
of its structure extending into the extracellular space. When the cell
encounters another cell type capable of responding to the message, the two
cells link up via the membranebound protein.
• This type of signaling, sometimes termed juxtacrine, is of particular
importance in the growth and differentiation of tissues as well as in the
functioning of cells that protect the body against pathogens . It is one way in
which similar types of cells ―recognize‖ each other and form tissues.
hormone concentrations in the blood, the excretion of ions into the urine,
Physiology-A 229
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
2. Receptors
3. Types of Receptors
Physiology-A 231
Learning Objectives
Physiology-A 232
Receptors
Physiology-A 243
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
Physiology-A 245
Learning Objectives
Physiology-A 246
Signal Transduction Pathways
249
Subject Name–A
Physiology 249
Signal Transduction Pathways
• In a few cases, the inactive receptors are located in the cytosol and
move into the nucleus after binding their ligand.
• Most of the inactive receptors, however, already reside in the cell
nucleus, where they bind to and are activated by their respective
ligands.
• In both cases, receptor activation leads to altered rates of transcription
of one or more genes in a particular cell.
Physiology-A 258
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 260
Learning Objectives
Physiology-A 261
Introduction
Physiology-A 262
Structure And Maintenance Of Neurons
• A neuron’s cell body (or soma) contains the nucleus and ribosomes
and thus has the genetic information and machinery necessary for
protein synthesis.
265
Subject Name–A
Physiology 265
Structure and Maintenance of Neurons
• In the PNS, glial cells called Schwann cells form individual myelin
sheaths surrounding 1- to 1.5-mm-long segments at regular intervals
along some axons.
• Kinesin transport mainly occurs from the cell body toward the axon
terminals (anterograde) and is important in moving nutrient
molecules, enzymes, mitochondria, neurotransmitter-filled vesicles,
and other organelles.
Physiology-A 273
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. Glial Cells
5. REFERENCES
Physiology-A 275
Learning Objectives
Physiology-A 276
Introduction
Physiology-A 277
Functional Classes of Neurons
• As a rough estimate, for each afferent neuron entering the CNS, there
are 10 efferent neurons and 200,000 interneurons. Thus, the great
majority of neurons are interneurons.
• At their peripheral ends (the ends farthest from the CNS), afferent
neurons have sensory receptors, which respond to Various physical
or chemical changes in their environment by generating electrical
signals in the neuron.
280
Subject Name–A
Physiology 280
Functional Classes of Neurons
• At most synapses, the signal a term that also includes the chemicals
efferent neurons use to communicate with effector cells (e.g., a muscle
cell).
• Neurons account for only about half of the cells in the human CNS.
the remainder are glial cells (glia, “glue”).
• Glial cells surround the axon and dendrites of neurons, and provide
them with physical and metabolic support.
glial cells retain the capacity to divide throughout life. Consequently,
many CNS tumors actually originate from glial cells rather than from
neurons.
• There are several different types of glial cells found in the CNS .
• A second type of CNS glial cell, the astrocyte, helps regulate the
composition of the extracellular fluid in the CNS by removing
potassium ions and neurotransmitters around synapses.
• Ependymal cells line the fluid-filled cavities within the brain and
spinal cord and regulate the production and flow of cerebrospinal
fluid, which will be described later.
• Schwann cells, the glial cells of the PNS, have most of the properties
of the CNS glia. As mentioned earlier, Schwann cells produce the
myelin sheath of the axons of the peripheral neurons.
Physiology-A 290
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
5. References
Physiology-A 292
Learning Objectives
Physiology-A 293
Introduction
Physiology-A 294
Neural Growth and Regeneration
• If axons are severed, they can repair themselves and restore significant
function provided that the damage occurs outside the CNS and does
not affect the neuron’s cell body.
• After such an injury, the axon segment that is separated from the cell
body degenerates. The part of the axon still attached to the cell body
then gives rise to a growth cone, which grows out to the effector organ
so that function can be restored.
297
Subject Name–A
Physiology 297
Neural Growth and Regeneration
• Severed axons within the CNS may grow small new extensions, but no
significant regeneration of the axon occurs across the damaged site,
and there are no well-documented reports of significant return of
function. Functional regeneration is prevented either by some basic
difference of CNS neurons or some property of their environment,
such as inhibitory factors associated with nearby glia.
• Researchers are trying a variety of ways to provide an environment
that will support axonal regeneration in the CNS. They are creating
tubes to support regrowth of the severed axons
Physiology-A 304
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. Graded Potentials
5. References
Physiology-A 306
Learning Objectives
Physiology-A 307
Introduction
Physiology-A 308
The Resting Membrane Potential
311
Subject Name–A
Physiology 311
The Resting Membrane Potential
• They are called graded potentials simply because the magnitude of the
potential change can vary (is ―graded‖).
Subject Name 315
Physiology-A 315
Graded Potentials
Physiology-A 319
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. Action Potentials
6. References
Physiology-A 321
Learning Objectives
Physiology-A 322
Introduction
Physiology-A 323
Action Potentials
326
Subject Name–A
Physiology 326
Action Potentials
Physiology-A 336
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
6. Synaptic Strength
7. References
Physiology-A 338
Learning Objectives
Physiology-A 339
Introduction
Physiology-A 340
Functional Anatomy of Synapses
Chemical Synapses
• The axon of the presynaptic neuron ends in slight swellings, the axon
terminals, which hold the synaptic vesicles that contain
neurotransmitter molecules.
• The postsynaptic membrane adjacent to an axon terminal has a high
density of membrane proteins that make up a specialized area called
the postsynaptic density.
• A 10 to 20 nm extracellular space, the synaptic cleft, separates the
presynaptic and postsynaptic neurons and prevents direct propagation
of the current from the presynaptic neuron to the postsynaptic cell.
Subject Name 341
Physiology-A 342
Functional Anatomy of Synapses
343
Subject Name–A
Physiology 343
Mechanisms of Neurotransmitter Release
• These ions then are free to move according to the electrical and
concentration gradients across the membrane. Thus, the net movement
of positive ions is into the postsynaptic cell, causing a slight
depolarization. This membrane potential change is called an
excitatory postsynaptic potential (EPSP).
• Inhibitory Chemical Synapses
At inhibitory chemical synapses, the potential change in the
postsynaptic neuron is generally a hyperpolarizing graded potential
called an inhibitory postsynaptic potential (IPSP, ). Alternatively,
there may be no IPSP but rather stabilization of the membrane
potential at its existing value.
• Presynaptic Mechanisms
• A presynaptic terminal does not release a constant amount of
neurotransmitter every time it is activated.One reason for this variation
involves Ca2+ concentration.
• Calcium ions that have entered the terminal during previous action
potentials are pumped out of the cell or (temporarily) into intracellular
organelles.
• The greater the amount of neurotransmitter released, the greater the
number of ion channels opened in the postsynaptic membrane and the
larger the amplitude of the EPSP or IPSP in the postsynaptic cell
Subject Name 351
Physiology-A 351
Synaptic Strength
Physiology-A 353
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. Neuroeffector Communication
7. References
Physiology-A 355
Learning Objectives
Physiology-A 356
Introduction
Physiology-A 357
Neurotransmitters and Neuromodulators
• The word modulation is used for these complex responses, and the
messengers that cause them are called neuromodulators.
• Neuromodulators are often synthesized by the presynaptic cell and
coreleased with the neurotransmitter.
• Many hormones, paracrine factors, and messengers used by the
immune system serve as neuromodulators.
• Neuromodulators often modify the postsynaptic cell’s response to
specific neurotransmitters, amplifying or dampening the effectiveness
of ongoing synaptic activity , they may change the presynaptic cell’s
synthesis, release, reuptake, or metabolism of a transmitter.
Subject Name 358
Physiology-A 6
Neurotransmitters and Neuromodulators
360
Subject Name–A
Physiology 360
Neuroeffector Communication
Physiology-A 370
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
5. Cerebrospinal Fluid
7. References
Physiology-A 372
Learning Objectives
Physiology-A 373
Introduction
Physiology-A 374
Peripheral Nervous System
• Cerebrospinal Fluid
• Ependymal cells make up a specialized epithelial structure called the
choroid plexus, which produces CSF at a rate that completely
replenishes it about three times per day.
• It circulates through the brain’s interconnected ventricular system to
the brainstem, where it passes through small openings out to the
subarachnoid space surrounding the brain and spinal cord.
• Aided by circulatory, respiratory, and postural pressure changes, the
fluid ultimately flows to the top of the outer surface of the brain,
where most of it enters the bloodstream through one-way valves in
large veins.
Subject Name 381
Physiology-A 381
Cerebrospinal Fluid
• The blood–brain barrier is formed by the cells that line the smallest
blood vessels in the brain.
• It has anatomical structures, such as tight junctions, and physiological
transport systems that handle different classes of substances in
different ways.
• Substances that dissolve readily in the lipid components of the plasma
membranes enter the brain quickly.
• The extracellular fluid of the brain and spinal cord is a product of—but
chemically different from—the blood. drugs that have rapid effects in
the CNS because of their high lipid solubility are barbiturates,
nicotine, caffeine, and alcohol
Subject Name 385
Physiology-A 385
The Blood–Brain Barrier
Physiology-A 387
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. Sensory Receptors
5. References
Physiology-A 389
Learning Objectives
Physiology-A 390
Introduction
Physiology-A 391
Sensory Receptors
• Information about the external world and about the body’s internal
environment exists in different forms—pressure, temperature, light,
odorants, sound waves, chemical concentrations.
• Sensory receptors at the peripheral ends of afferent neurons
change this information into graded potentials that can initiate action
potentials, which travel into the central nervous system.
• The receptors are either specialized endings of the primary afferent
neurons themselves or separate receptor cells (someof which are
actually specialized neurons) that signal the primary afferent neurons
by releasing neurotransmitters.
Subject Name 392
Physiology-A 392
Sensory Receptors
• The signal that activates sensory receptors, are translated into the
language of graded potentials or action potentials. The process by
which a stimulus—a photon of light, say, or the mechanical stretch of
a tissue—is transformed into an electrical response is known as
sensory transduction.
• The transduction process in all sensory receptors involves the opening
or closing of ion channels that receive information about the internal
and external world, either directly or through a second- messenger
system.
Physiology-A 404
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 406
Learning Objectives
Physiology-A 407
Introduction
Physiology-A 408
Primary Sensory Coding
• Another term for stimulus type (heat, cold, sound, or pressure, for
example) is stimulus modality.
• Modalities can be divided into submodalities. Cold and warm are
submodalities of temperature, whereas salty and sweet are
submodalities of taste.
• The type of sensory receptor a stimulus activates is the major factor in
coding the stimulus modality. a given receptor type is particularly
sensitive to one modality—the adequate stimulus—because of the
signal transduction mechanisms and ion channels incorporated in the
receptor’s plasma membrane.
411
Subject Name–A
Physiology 411
Stimulus Type
• The precision, or acuity, with which locate and discern one stimulus
from an adjacent one depends upon the amount of convergence of
neuronal input in the specific ascending pathways.
• The greater the convergence, the less the acuity. Other factors affecting
acuity are the size of the receptive field covered by a single sensory
unit , the density of sensory units, and the amount of overlap in nearby
receptive fields.
Physiology-A 421
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
5. Somatic Sensation
6. Vision
7. References
Physiology-A 423
Learning Objectives
Physiology-A 424
Introduction
Physiology-A 425
Neural Pathways in Sensory Systems
• The central processes of the afferent neurons enter the brain or spinal
cord and synapse upon interneurons there.
• The central processes may diverge to terminate on several, or many,
interneurons or converge so that the processes of many afferent
neurons terminate upon a single interneuron .
• The interneurons upon which the afferent neurons synapse are
called second-order neurons, and these in turn synapse with third-
order neurons, and so on, until the information (coded action
potentials) reaches the cerebral cortex.
• Sensation from the skin, skeletal muscles, bones, tendons, and joints—
somatic sensation—is initiated by a variety of sensory receptors
collectively called somatic receptors.
• Some of these receptors respond to mechanical stimulation of the
skin, hairs, and underlying tissues, whereas others respond to
temperature or chemical changes.
• Activation of somatic receptors gives rise to the sensations of touch,
pressure, awareness of the position of the body parts and their
movement, temperature, pain, and itch. Each sensation is associated
with a specific receptor type.
Subject Name 431
Physiology-A 431
Somatic Sensation
Physiology-A 438
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. Hearing
4. Vestibular System
5. Chemical Senses
6. References
Physiology-A 440
Learning Objectives
Physiology-A 441
Introduction
Physiology-A 442
Hearing
445
Subject Name–A
Physiology 445
Hearing
Gustation
• The specialized sense organs for gustation (taste) are the 10,000 or
so taste buds found in the mouth and throat, the vast majority on
the upper surface and sides of the tongue.
• Taste buds are small groups of cells arranged like orange slices around
a hollow taste pore and are found in the walls of visible structures
called lingual papillae .
• Some of the cells serve mainly as supporting cells, but others are
specialized epithelial cells that act as receptors for various chemicals
in the food we eat.
Subject Name 450
Physiology-A 450
Gustation
Physiology-A 455
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 457
Learning Objectives
Physiology-A 458
Introduction
Physiology-A 459
Hormone Structures and Synthesis
• Hormones fall into three major structural classes: (1) amines, (2)
peptides and proteins, and (3) steroids.
• Amine Hormones
• The amine hormones are derivatives of the amino acid tyrosine.
They include the thyroid hormones (produced by the thyroid ) and
the catecholamines epinephrine and norepinephrine (produced by
the adrenal medulla) and dopamine (produced by the hypothalamus).
The adrenal medulla secretes mainly two catecholamines, epinephrine
and norepinephrine. In humans, the adrenal medulla
462
Subject Name–A
Physiology 462
Amine Hormones
• Steroid hormones are primarily produced by the adrenal cortex and the
gonads (testes and ovaries), as well as by the placenta during
pregnancy.
• vitamin D is enzymatically converted in the body to an active steroid
hormone.
• In both the gonads and the adrenal cortex, the hormone-producing
cells are stimulated by the binding of an anterior pituitary gland
hormone to its plasma membrane receptor. These receptors are linked
to Gs proteins which activate adenylyl cyclase and cAMP production.
• Once formed, the steroid hormones are not stored in the cytosol in
membrane-bound vesicles, because the lipophilic nature of the steroids
allows them to freely diffuse across lipid bilayers
• Once they are synthesized, steroid hormones diffuse across the plasma
membrane into the circulation. Because of their lipid nature, steroid
hormones are not highly soluble in blood.
Physiology-A 473
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
5. References
Physiology-A 475
Learning Objectives
Physiology-A 476
Introduction
Physiology-A 477
Hormone Transport In The Blood
480
Subject Name–A
Physiology 480
Hormone Metabolism and Excretion
• Once a hormone has been synthesized and secreted into the blood, has
acted on a target tissue, and its increased activity is no longer required,
the concentration of the hormone in the blood usually returns to
normal.
(2) its rate of removal from the blood. Removal, or ―clearance,‖ of the
hormone occurs either by excretion or by metabolic transformation.
• The liver and the kidneys are the major organs that metabolize or
excrete hormones.
Subject Name 482
Physiology-A 482
Hormone Metabolism and Excretion
• The liver and kidneys, are not the only routes for eliminating
hormones.
• Sometimes a hormone is metabolized by the cells upon which it acts.
• some peptide hormones, for example, endocytosis of hormone–
receptor complexes on plasma membranes enables cells to remove the
hormones rapidly from their surfaces and catabolize them
intracellularly.
Physiology-A 488
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 490
Learning Objectives
Physiology-A 491
Introduction
Physiology-A 492
Mechanisms of Hormone Action
Hormone Receptors
• Because hormones are transported in the blood, they can reach all
tissues. The response to a hormone is highly specific, involving only
the target cells for that hormone.
495
Subject Name–A
Physiology 495
Mechanisms of Hormone Action
• The events initiated when a hormone binds to its receptor— that is, the
mechanisms by which the hormone elicits a cellular response—are one
or more of the signal transduction pathways that apply to all chemical
messengers
• The steroid hormones and thyroid hormone are lipophilic, and their
receptors, which are intracellular, are members of the nuclear receptor
superfamily.
• The binding of hormone to its receptor leads to the activation (or in
some cases, inhibition) of the transcription of particular genes, causing
a change in the synthesis rate of the proteins coded for by those genes.
• The ultimate result of changes in the concentrations of these proteins
is an enhancement or inhibition of particular processes the cell carries
out or a change in the cell’s rate of protein secretion.
Physiology-A 505
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 507
Learning Objectives
Physiology-A 508
Introduction
Physiology-A 509
Inputs That Control Hormone Secretion
512
Subject Name–A
Physiology 512
Control by Plasma Concentrations of Mineral Ions
or Organic Nutrients
• The tropic hormones usually stimulate not only secretion but also the
growth of the stimulated gland.
Physiology-A 520
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 522
Learning Objectives
Physiology-A 523
Introduction
Physiology-A 524
Control Systems Involving the Hypothalamus and
Pituitary Gland
• The two posterior pituitary hormones are the peptides oxytocin and
vasopressin.
• Oxytocin is involved in two reflexes related to reproduction. In one
case, oxytocin stimulates contraction of smooth muscle cells in the
breasts, which results in milk ejection during lactation.
• This occurs in response to stimulation of the nipples of the breast
during nursing of the infant.
• Sensory cells within the nipples send stimulatory neural signals to the
brain that terminate on the hypothalamic cells that make oxytocin,
causing their activation and thus release of the hormone.
Subject Name 529
Physiology-A 529
Posterior Pituitary Hormones
Physiology-A 537
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 539
Learning Objectives
Physiology-A 540
Introduction
Physiology-A 541
Types of Endocrine Disorders
Hyposecretion
• An endocrine gland may be secreting too little hormone because the
gland is not functioning normally, a condition termed primary
hyposecretion. Examples include
• (1) partial destruction of a gland, leading to decreased hormone
secretion;
• (2) an enzyme deficiency resulting in decreased synthesis of the
hormone;
544
Subject Name–A
Physiology 544
Hyposecretion
• Drugs that do not alter the hormone’s secretion but instead block the
hormone’s actions on its target cells (receptor antagonists).
• The receptors for a hormone may be normal but some signaling event
that occurs within the cell after the hormone binds to its receptors may
be defective.
• There may be a deficiency of the enzymes that catalyze the activation.
For example, some men secrete testosterone (the major circulating
androgen) normally and have normal receptors for androgens.
• Missing the intracellular enzyme that converts testosterone to
dihydrotestosterone, a potent metabolite of testosterone that binds to
androgen receptors.
• One result of this is the increased heart rate typical of people with
increased plasma concentrations of thyroid hormone.
Physiology-A 552
PHYSIOLOGY-A
PHARM 313
Lecture # 34 :Muscle
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 554
Learning Objectives
Physiology-A 555
Introduction
• Muscle is one of the four tissue types that make up the human body.
The ability to harness chemical energy to produce force and movement
is present to a limited extent in most cells, but in muscle cells it has
become dominant. Muscles generate force and movements used to
regulate the internal environment, and they also produce movements
of the body in relation to the external environment. Most skeletal
muscle, as the name implies, is attached to bone, and its contraction is
responsible for supporting and moving the skeleton contraction of
skeletal muscle is initiated by action potentials in neurons of the
somatic motor division of the peripheral nervous system and is usually
under voluntary control.
Physiology-A 556
Skeletal Muscle Structure
• The most striking feature seen when viewing skeletal muscle through
a microscope is a distinct series of alternating light and dark bands
perpendicular to the long axis.
• Cellular Structure
• Due to its elongated shape and the presence of multiple nuclei, a
skeletal muscle cell is also referred to as a muscle fiber.
• Each muscle fiber is formed during development by the fusion of a
number of undifferentiated, mononucleated cells known as myoblasts
into a single, cylindrical, multinucleated cell.
• Some tendons are very long, with the site where the tendon attaches to
the bone far removed from the end of the muscle.
• For example, some of the muscles that move the fingers are in the
forearm (wiggle your fingers and feel the movement of the muscles
just below your elbow).
• The thin filaments (which are about half the diameter of the thick
filaments) are principally composed of the protein actin, as well as a
protein called nebulin that is thought to play a role in thin filament
assembly, and two other proteins— troponin and tropomyosin—that
have important functions in regulating contraction.
• An actin molecule is a globular protein composed of a single
polypeptide (a monomer) that polymerizes with other actin monomers
to form a polymer made up of two intertwined, helical chains.
• These chains make up the core of a thin filament.
• Each actin molecule contains a binding site for myosin.
Subject Name 565
Physiology-A 565
Filament Structure
Physiology-A 569
PHYSIOLOGY-A
PHARM 313
Lecture # 35 :Muscle
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 571
Learning Objectives
Physiology-A 572
Introduction
• Muscle is one of the four tissue types that make up the human body.
The ability to harness chemical energy to produce force and movement
is present to a limited extent in most cells, but in muscle cells it has
become dominant. Muscles generate force and movements used to
regulate the internal environment, and they also produce movements
of the body in relation to the external environment. Most skeletal
muscle, as the name implies, is attached to bone, and its contraction is
responsible for supporting and moving the skeleton contraction of
skeletal muscle is initiated by action potentials in neurons of the
somatic motor division of the peripheral nervous system and is usually
under voluntary control.
Physiology-A 573
Molecular Mechanisms of Skeletal Muscle
Contraction
576
Subject Name–A
Physiology 576
Molecular Mechanisms Of Skeletal Muscle
Contraction
• In each receptor protein; both sodium and potassium ions can pass
through these channels. Because of the differences in electrochemical
gradients across the plasma membrane more Na+ moves in than K+
out, producing a local depolarization of the motor end plate known as
an end-plate potential (EPP).
• This action potential is then propagated over the surface of the muscle
fiber and into the T-tubules.
• Every action potential in a motor neuron normally produces an action
potential in each muscle fiber in its motor unit
• There are many ways by which disease or drugs can modify events at
the neuromuscular junction.
• For example, curare, a deadly arrowhead poison still used by some
indigenous peoples of South America, binds strongly to nicotinic ACh
receptors.
• It does not open their ion channels, however, and is resistant to
destruction by acetylcholinesterase. When a receptor is occupied by
curare, Ach cannot bind to the receptor.
• There is no resulting EPP in the motor end plate and no contraction.
Physiology-A 586
PHYSIOLOGY-A
PHARM 313
Lecture # 36 :Muscle
Faisal Razzaq
(Lecturer)
1. Introduction
5. References
Physiology-A 588
Learning Objectives
Physiology-A 589
Introduction
• Muscle is one of the four tissue types that make up the human body.
The ability to harness chemical energy to produce force and movement
is present to a limited extent in most cells, but in muscle cells it has
become dominant. Muscles generate force and movements used to
regulate the internal environment, and they also produce movements
of the body in relation to the external environment. Most skeletal
muscle, as the name implies, is attached to bone, and its contraction is
responsible for supporting and moving the skeleton contraction of
skeletal muscle is initiated by action potentials in neurons of the
somatic motor division of the peripheral nervous system and is usually
under voluntary control.
Physiology-A 590
Mechanics of Single-Fiber Contraction
• When a muscle develops tension but does not shorten or lengthen, the
contraction is said to be an isometric (constant length) contraction.
593
Subject Name–A
Physiology 593
Eccentric ( Lengthening ) Contraction
• In no other cell type does the rate of ATP breakdown increase so much
from one moment to the next as in a skeletal muscle fiber when it goes
from rest to a state of contractile activity.
• Creatine Phosphate
• Phosphorylation of ADP by creatine phosphate (CP) provides a very
rapid means of forming ATP at the onset of contractile activity.
• When the chemical bond between creatine (C) and phosphate is
broken, the amount of energy released is about the same as that
released when the terminal phosphate bond in ATP is broken.
• This energy, along with the phosphate group, can be transferred to
ADP to form ATP in a reversible reaction catalyzed by the enzyme
creatine kinase:
• Oxidative Phosphorylation
• At moderate levels of muscular activity, most of the ATP used for
muscle contraction is formed by oxidative phosphorylation .
• During the first 5 to 10 min of moderate exercise, breakdown of
muscle glycogen to glucose provides the major fuel contributing to
oxidative phosphorylation.
• For the next 30 min or so, blood-borne fuels become dominant, blood
glucose and fatty acids contributing approximately equally.
• Glycolysis
• If the intensity of exercise exceeds about 70% of the maximal rate of
ATP breakdown, glycolysis contributes an increasingly significant
fraction of the total ATP generated by the muscle.
• The glycolytic pathway, although producing only small quantities of
ATP from each molecule of glucose metabolized, can produce ATP
quite rapidly when enough enzymes and substrate are available, and it
can do so in the absence of oxygen (anaerobic conditions).
• This is associated with a corresponding increase in the production of
lactic acid.
Subject Name 599
Physiology-A 599
Skeletal Muscle Energy Metabolism
Physiology-A 603
PHYSIOLOGY-A
PHARM 313
Lecture # 37 :Muscle
Faisal Razzaq
(Lecturer)
1. Introduction
4. Whole-muscle Contraction
6. References
Physiology-A 605
Learning Objectives
Physiology-A 606
Introduction
• Muscle is one of the four tissue types that make up the human body.
The ability to harness chemical energy to produce force and movement
is present to a limited extent in most cells, but in muscle cells it has
become dominant. Muscles generate force and movements used to
regulate the internal environment, and they also produce movements
of the body in relation to the external environment. Most skeletal
muscle, as the name implies, is attached to bone, and its contraction is
responsible for supporting and moving the skeleton contraction of
skeletal muscle is initiated by action potentials in neurons of the
somatic motor division of the peripheral nervous system and is usually
under voluntary control.
Physiology-A 607
Types of Skeletal Muscle Fibers
• These fibers are classified as oxidative fibers. Most of the ATP such
fibers produce is dependent upon blood flow to deliver oxygen and
fuel molecules to the muscle. Not surprisingly, therefore, these fibers
are surrounded by many small blood vessels.
• They also contain large amounts of an oxygen-binding protein known
as myoglobin, which increases the rate of oxygen diffusion into the
fiber and provides a small store of oxygen. The large amounts of
myoglobin present in oxidative fibers give the fibers a dark red color;
thus, oxidative fibers are often referred to as red muscle fibers.
610
Subject Name–A
Physiology 610
Types of Skeletal Muscle Fibers
• All the muscle fibers in a single motor unit are of the same fiber type.
Thus, apply the fiber designation to the motor unit and refer to slow-
oxidative motor units, fast-oxidative-glycolytic motor units, and fast-
glycolytic motor units.
• Most skeletal muscles are composed of all three motor unit types
interspersed with each other .
• No muscle has only a single fiber type. Depending on the proportions
of the fiber types present, muscles can differ considerably in their
maximal contraction speed, strength, and fatigability.
• For example, the muscles of the back, which must be able to maintain
their activity for long periods of time without fatigue while supporting
an upright posture, contain large numbers of slow-oxidative fibers.
• In contrast, muscles in the arms that are called upon to produce large
amounts of tension over a short time period, as when a boxer throws a
punch, have a greater proportion of fast-glycolytic fibers.
• Leg muscles used for fast running over intermediate distances
typically have a high proportion of fast-oxidative-glycolytic fibers.
Significant variation occurs between individuals.
• For example, elite distance runners on average have greater than 75%
slow-twitch fibers in the gastrocnemius muscle of the lower leg,
• In elite sprinters the same muscle has 75% fast-twitch fibers.
The total tension a muscle can develop depends upon two factors:
(1) the amount of tension developed by each fiber, and
(2) the number of fibers contracting at any time. By controlling these
two factors, the nervous system controls whole-muscle tension as well
as shortening velocity.
The number of fibers contracting at any time depends on
(1) the number of fibers in each motor unit (motor unit size), and
(2) the number of active motor units.
• If the motor units are large, large increases in tension will occur as
each additional motor unit is activated.
• Thus, finer control of muscle tension is possible in muscles with small
motor units.
• The process of increasing the number of motor units that are active in
a muscle at any given time is called recruitment. It is achieved by
activating excitatory synaptic inputs to more motor neurons.
• The greater the number of active motor neurons, the more motor units
recruited and the greater the muscle tension.
Physiology-A 620
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 622
LEARNING OBJECTIVES
Physiology-A 624
Introduction
Physiology-A 625
Motor Control Hierarchy
Physiology-A 637
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 639
Learning Objectives
Physiology-A 641
Introduction
Physiology-A 642
Local Control of Motor Neurons
• The local control systems are the relay points for instructions to the
motor neurons from centers higher in the motor control hierarchy.
• In addition, the local control systems are very important in adjusting
motor unit activity to unexpected obstacles to movement and to
painful stimuli in the surrounding environment.
• To carry out these adjustments, the local control systems use
information carried by afferent fibers from sensory receptors in the
muscles, tendons, joints, and skin of the body parts to be moved.
644
Subject Name–A
Physiology 644
Interneurons
• When the afferent fibers from the muscle spindle enter the central
nervous system, they divide into branches that take different paths.
• Path A makes excitatory synapses directly onto motor neurons that
return to the muscle that was stretched, thereby completing a reflex arc
known as the stretch reflex.
• This reflex is important in maintaining balance and posture, and is
probably most familiar in the form of the knee-jerk reflex, part of a
routine medical examination.
Physiology-A 654
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
5. References
Physiology-A 656
Learning Objectives
Physiology-A 658
Introduction
Physiology-A 659
The Brain Motor Centersand the Descending
PathwaysThey Control
Cerebral Cortex
• A network of connected neurons in the frontal and parietal lobes of the
cerebral cortex has a critical function in both the planning and ongoing
control of voluntary movements, functioning in both the highest and
middle levels of the motor control hierarchy.
• A large number of neurons that give rise to descending pathways for
motor control come from two areas of sensorimotor cortex on the
posterior part of the frontal lobe: the primary motor cortex
(sometimes called simply the motor cortex) and the premotor area .
661
Subject Name–A
Physiology 661
Subcortical and Brainstem Nuclei
• The nerve fibers of the corticospinal pathways have their cell bodies
in the sensorimotor cortex and terminate in the spinal cord. The
corticospinal pathways are also called the pyramidal tracts or
pyramidal system because of their triangular shape as they pass
along the ventral surface of the medulla oblongata.
• Corticospinal pathways control rapid, fine movements of the distal
extremities, such as those you make when you manipulate an object
with your fingers.
• After damage occurs to the corticospinal pathways, movements are
slower and weaker, individual finger movements are absent, and it is
difficult to release a grip.
• Axons from neurons in the brainstem also form pathways that descend
into the spinal cord to influence motor neurons.
Physiology-A 671
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
2. Learning Objectives
3. Muscle Tone
4. REFERENCES
Physiology-A 673
Learning Objectives
Physiology-A 675
Introduction
Physiology-A 676
Muscle Tone
678
Subject Name–A
Physiology 678
Abnormal Muscle Tone
Physiology-A 685
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
2. Learning Objectives
4. Walking
5. References
Physiology-A 687
Learning Objectives
Physiology-A 689
Introduction
Physiology-A 690
Maintenance of Upright Posture and Balance
•The skeleton supporting the body is a system of long bones and a many-
jointed spine that cannot stand erect against the forces of gravity without
the support provided through coordinated muscle activity.
692
Subject Name–A
Physiology 692
Maintenance of Upright Posture and Balance
• For stability, the center of gravity must be kept within the base of
•support the feet provide .
• Once the center of gravity has moved beyond this base, the body
will fall unless one foot is shifted to broaden the base of support.
• People can operate under conditions of unstable equilibrium because
complex interacting postural reflexes maintain their balance.
• As one leg is flexed and lifted off the ground, the other is extended
more strongly to support the weight of the body, and the positions of
various parts of the body are shifted to move the center of Gravity
over the single, weight-bearing leg.
Physiology-A 699
References
Physiology-A 700
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. States Of Consciousness
4. References
Physiology-A 702
Learning Objectives
Physiology-A 703
Introduction
Physiology-A 704
States of Consciousness
• Periods of sleep and wakefulness alternate about once a day; that is,
they manifest a circadian rhythm consisting on average of 8 h asleep
and 16 h awake.
• Within the sleep portion of this circadian cycle, NREM sleep and
REM sleep alternate, as we have seen. As we shift from the waking
state through NREM sleep to REM sleep, attention shifts to internally
generated stimuli (dreams) so that we are largely insensitive to
external stimuli.
Physiology-A 717
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. Conscious Experiences
4. References
Physiology-A 719
Learning Objectives
Physiology-A 720
Introduction
Physiology-A 721
Conscious Experiences
• If the stimulus has meaning for the individual, behavioral changes also
occur.
• The person stops what he or she is doing, listens intently, and turns
toward the stimulus source, a behavior called the orienting response.
724
Subject Name–A
Physiology 724
Selective Attention
Physiology-A 732
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
3. Motivation
4. Emotion
5. References
Physiology-A 734
Learning Objectives
Physiology-A 735
Introduction
Physiology-A 736
Motivation And Emotion
739
Subject Name–A
Physiology 739
Motivation
Neural Pathways
• The mesolimbic and mesocortical dopamine pathways originate in
the midbrain and consist of neuronal pathways that release
dopamine in brain regions that process emotions, including the
prefrontal cortex and parts of the limbic system such as the nucleus
accumbens .
• These pathways are implicated in evaluating the availability of
incentives and reinforcers (asking, Is it worth it? for example) and
translating the evaluation into action.
Chemical Mediators
• Dopamine is a major neurotransmitter in the pathway that mediates the
brain reward systems and motivation.
• For this reason, drugs that increase synaptic activity in the dopamine
pathways increase selfstimulation rates—that is, they provide positive
reinforcement.
• Amphetamines are an example of such a drug because they increase
the presynaptic release of dopamine.
Physiology-A 747
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 749
Learning Objectives
Physiology-A 750
Introduction
Physiology-A 751
Altered States of Consciousness
Physiology-A 762
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 764
Learning Objectives
Physiology-A 765
Introduction
Physiology-A 766
Learning and Memory
769
Subject Name–A
Physiology 769
Memory
• The hippocampus, amygdala, and other parts of the limbic system are
required for the formation of declarative memories.
• Procedural memory, can be defined as the memory of how to do
things (sometimes this is also called ―implicit‖ or ―reflexive‖
memory).
• This is the memory for skilled behaviors independent of conscious
understanding, as, for example, riding a bicycle.
Physiology-A 775
PHYSIOLOGY-A
PHARM 313
Faisal Razzaq
(Lecturer)
1. Introduction
4. References
Physiology-A 777
Learning Objectives
Physiology-A 778
Introduction
Physiology-A 779
Cerebral Dominance and Language
782
Subject Name–A
Physiology 782
Cerebral Dominance and Language
• The specific defects that occur vary according to the region of the
brain that is damaged.
• For example, damage to the left temporal region known as Wernicke’s
area generally results in aphasias that are more closely related to
comprehension—the individuals have difficulty understanding spoken
or written language even though their hearing and vision are
unimpaired.
Physiology-A 790
THANKS