Module 4 (Biomolecules)
Module 4 (Biomolecules)
Module -4
Biomolecules
The Four Major Macromolecules
The molecular building blocks of life are made from organic compounds
Characteristics of Biomolecules
• Biomolecules are the molecules of life; Most of In organic molecules:
these are organic compounds. The core is the carbon skeleton (determines the
• Most of the chemical compounds present in living overall shape of the molecule)
systems always contain carbon and Hydrogen. The length and arrangement of the carbon skeleton.
• Carbon atoms covalently bonded to form straight The kinds and location of the atoms attached to it
chains, branched chains, and ring structures. means the functional groups will determine the
• They are main structural components of cells and specific chemical properties of that molecule.
tissues.
• They participate and control all metabolic reactions.
• Transmits hereditary information as DNA and RNA.
• Biomolecules provide energy for all activities of
living beings.
• They have specific shapes and dimensions.
• Functional groups determines their chemical
properties.
• Biomolecules are polymer molecules and are
constructed from small building block (monomers) .
Biomolecules are polymers
• Biomolecules are very large molecules –
Macromolecules
• Macro molecules are polymer molecules and are
constructed from small building block (monomers)
molecules.
• Building block (monomers) molecules have simple
structure.
• Storage- carbohydrates are stored in the body for immediate source of energy.
In plants it is stored as starch and in animals it is stored as glycogen.
• Our body can transform extra carbohydrates into stored energy in the form of glycogen. Several hundred
grams can be stored in our liver and muscles.
• Structural components- in plant cells , carbohydrates (cellulose) constitute the structural framework.
Denaturation of proteins involves the disruption and possible destruction of both the
secondary and tertiary structures.
• In tertiary structure there are four types of bonding interactions between "side chains"
including:
hydrogen bonding, salt bridges, disulfide bonds, and non-polar hydrophobic
interactions. which may be disrupted.
• The factors that affect the denaturation of proteins include: heating ; pH ;detergents;
oxidizing and reducing agents etc.
Therefore, a variety of reagents and conditions can cause denaturation. The most common
observation in the denaturation process is the precipitation or coagulation of the protein.
Denaturation of proteins
Proteins: Examples
MONOMERS: NUCLEOTIDES
Pentose sugar
Phosphate group
❖ Guanine
❖ Guanine is another two ringed purine derived nucleobase composed of a
fused pyrimidine-imidazole ring system that is conjugated with double
bonds. It forms hydrogen bonds with cytosine in the nucleotide sequence.
Guanine combines with ribose to form guanosine and with deoxyribose to
form deoxyguanosine.
❖ Thymine
❖ Thymine is an organic compound that belongs to the pyrimidine family. It
forms double hydrogen bonds with adenine in the DNA helix. It is also
known as 5-methyluracil because it is methylated at the C5 position in the
molecule. It is not found in RNA strands.
❖ Cytosine
❖ Cytosine is a pyrimidine derived nitrogenous base that has an amino group
at the C4 position. It forms triple hydrogen bonds with guanine in the DNA
helix.
❖ Uracil
❖ Uracil is another pyrimidine derived nitrogenous base that is only found in
RNA molecules in place of thymine. It is a demythlated form of thymine
that is substituted with oxo groups at C2 and C4.
Ribonucleotides and Deoxyribonucleotides
• The ribonucleic acid has all the components same to that of the DNA with only 2 main differences within it. RNA has the
same nitrogen bases called the adenine, Guanine, Cytosine as that of the DNA except for the Thymine which is replaced by
the uracil. Adenine and uracil are considered as the major building blocks of RNA and both of them form base-pair with
the help of 2 hydrogen bonds.
RNA Types
• RNA Types: There are various types of RNA, out which most well-known and
most commonly studied in the human body are :
tRNA – Transfer RNA
• The transfer RNA is held responsible for choosing the correct protein or the
amino acids required by the body in-turn helping the ribosomes. It is located
at the endpoints of each amino acid. This is also called as soluble RNA and it
forms a link between the messenger RNA and the amino acid.
rRNA-Ribosomal RNA
• The rRNA is the component of the ribosome and are located within the
cytoplasm of a cell, where ribosomes are found. In all living cells, the
ribosomal RNA plays a fundamental role in the synthesis and translation of
mRNA into proteins. The rRNA is mainly composed of cellular RNA and are
the most predominant RNA within the cells of all living beings.
mRNA – Messenger RNA.
• This type of RNA functions by transferring the genetic material into the
ribosomes and pass the instructions about the type of proteins, required by
the body cells. Based on the functions, these types of RNA is called the
messenger RNA. Therefore, the mRNA plays a vital role in the process of
transcription or during the protein synthesis process.
RNA TYPES
• Comprises only 5%of the RNA in the cell . all members of the class function
as messengers carrying the information in a gene to the protein synthesizing
machinery.
Difference between different types of RNA
Genetic RNA:- In the absence of DNA, sometimes
RNA functions as genetic material from one
generation to another, e.g. TMV,QB
bacteriophage.
• Nucleotides not only make up the building blocks of Coenzymes NAD and NADP
life, but also form many different molecules that
function to make life possible.
Lipids
• Lipids tend to be hydrophobic, nonpolar, and made up mostly of
hydrocarbon chains, though there are some variations are there. Monoglycerides: 1 attached fatty acids
Diglycerides: 2 attached fatty acids
• The different varieties of lipids have different structures, and Triglycerides: 3 attached fatty acids
correspondingly diverse roles in organisms. For instance, lipids store
energy, provide insulation, make up cell membranes, form water-
repellent layers on leaves, and provide building blocks for hormones like
testosterone.
• Fats are just one type of lipid, a category of molecules united by their
inability to mix well with water.
• fat molecule consists of two kinds of parts: a glycerol backbone and
three fatty acid tails. Glycerol is a small organic molecule with three
hydroxyl (OH) groups, while a fatty acid consists of a long hydrocarbon
chain attached to a carboxyl group.
• A typical fatty acid contains 12–18 carbons, though some may have as
few as 4 or as many as 36.
• To make a fat molecule, the hydroxyl groups on the glycerol backbone
react with the carboxyl groups of fatty acids in a dehydration
synthesis reaction. This yields a fat molecule with three fatty acid tails
bound to the glycerol backbone via ester linkages (linkages containing an
oxygen atom next to a carbonyl, or C=O, group).
• Triglycerides may contain three identical fatty acid tails, or three different
fatty acid tails (with different lengths or patterns of double bonds).
Formation of triglycerides
Saturated and unsaturated fatty acids
• Saturated and unsaturated fatty acids
• The three fatty acid tails of a triglyceride need not be identical
to each other. Fatty acid chains may differ in length, as well as in
their degree of unsaturation.
• If there are only single bonds between neighboring carbons in
the hydrocarbon chain, a fatty acid is said to be saturated. (The
thing that fatty acids are saturated with is hydrogen; in a
saturated fat, as many hydrogen atoms as possible are attached
to the carbon skeleton.)
• When the hydrocarbon chain has a double bond, the fatty acid is
said to be unsaturated, as it now has fewer hydrogens. If there is
just one double bond in a fatty acid, it’s monounsaturated, while
if there are multiple double bonds, it’s polyunsaturated.
• The double bonds in unsaturated fatty acids, like other types of
double bonds, can exist in either a cis or a trans configuration. In
the cis configuration, the two hydrogens associated with the
bond are on the same side, while in a trans configuration, they
are on opposite sides (see below). A cis double bond generates
a kink or bend in the fatty acid, a feature that has important
consequences for the behavior of fats.
Trans fats: partial hydrogenation
• Saturated fatty acids tails are straight, so fat molecules with fully saturated tails can pack tightly against one another. This
tight packing results in fats that are solid at room temperature (have a relatively high melting point). For instance, most of
the fat in butter is saturated fat.
• In contrast, cis-unsaturated fatty acid tails are bent due to the cis double bond. This makes it hard for fat molecules with
one or more cis-unsaturated fatty acid tails to pack tightly. So, fats with unsaturated tails tend to be liquid at room
temperature (have a relatively low melting point) – they are what we commonly call oils. For instance, olive oil is mostly
made up of unsaturated fats.
• Trans fats
• At this point, you may be noticing that I’ve left something out: I didn’t say anything about unsaturated fats
with trans double bonds in their fatty acid tails, or trans fats. Trans fats are rare in nature, but are readily produced in an
industrial procedure called partial hydrogenation.
• In this process, hydrogen gas is passed through oils (made mostly of cis-unsaturated fats), converting some – but not all –
of the double bonds to single bonds. The goal of partial hydrogenation is to give the oils some of the desirable properties
of saturated fats, such as solidity at room temperature, but an unintended consequence is that some of the cis double
bonds change configuration and become trans double bonds. Trans-unsaturated fatty acids can pack more tightly and are
more likely to be solid at room temperature. Some types of shortening, for example, contain a high fraction of trans fats.
• Partial hydrogenation and trans fats might seem like a good way to get a butter-like substance at oil-like prices.
Unfortunately, trans fats have turned out to have very negative effects on human health. Because of a strong link
between trans fats and coronary heart disease, the U.S. Food and Drug Administration (FDA) recently issued a ban
on trans fats in foods, with a three-year deadline for companies to remove trans fats from their products.
Omega-3 and omega-6 fatty acids
• Omega fatty acids
• Another class of fatty acids that deserves mention includes the omega-
3 and omega-6 fatty acids. There are different types of omega-3 and
omega-6 fatty acids, but all of them are made from two basic precursor
forms: alpha-linolenic acid (ALA) for omega-3s and linoleic acid (LA) for
omega-6s.
• The human body needs these molecules (and their derivatives), but
can't synthesize either ALA or LA itself.
• Accordingly, ALA and LA are classified as essential fatty acids and must
be obtained from a person’s diet. Some fish, such as salmon, and some
seeds, such as chia and flax, are good sources of omega-3 fatty acids.
• Omega-3 and omega-6 fatty acids play a number of different roles in the
body. They are precursors (starting material) for the synthesis of a
number of important signaling molecules, including ones that regulate
inflammation and mood.
• They are involved in the synthesis of the prostaglandin hormones that
are necessary in controlling cell growth and specialization.
• Omega-3 fatty acids in particular may reduce the risk of sudden death
from heart attacks, decrease triglycerides in the blood, lower blood
pressure, and prevent the formation of blood clots.
Functions and sources of omega-3 and omega-6 fatty acids
Significance of fats
Roles of fats
• Fats have received a lot of bad publicity, and it’s true Functions of lipids
that eating large amounts of fried foods and other
“fatty” foods can lead to weight gain and cause health
problems. However, fats are essential to the body and
have a number of important functions.
• For instance, many vitamins are fat-soluble, meaning
that they must be associated with fat molecules in order
to be effectively absorbed by the body. Fats also provide
an efficient way to store energy over long time periods,
since they contain over twice as much energy per gram
as carbohydrates(9 calories versus 4 calories).
• Fats in animals provide protection from heat loss, they
additionally provide insulation for the body.
• Fat around some organs (eyes , heart and kidneys )
cushion the organs from physical damage.
• Like all the other large biological molecules, fats in the
right amounts are necessary to keep your body (and the
bodies of other organisms) functioning correctly.
Phospholipids
• Cells are surrounded by a structure called the plasma membrane,
which serves as a barrier between the inside of the cell and its
surroundings.
• Specialized lipids called phospholipids are major components of the
plasma membrane. Like fats, they are typically composed of fatty acid
chains attached to a backbone of glycerol. Instead having three fatty
acid tails, however, phospholipids generally have just two, and the third
carbon of the glycerol backbone is occupied by a modified phosphate
group.
• Different phospholipids have different modifiers on the phosphate
group, with choline (a nitrogen-containing compound) and serine (an
amino acid) being common examples. Different modifiers give
phospholipids different properties and roles in a cell.
• A phospholipid is an amphipathic molecule, meaning it has a Formation of the phospholipids
hydrophobic part and a hydrophilic part. The fatty acid chains are
hydrophobic and do not interact with water, whereas the phosphate-
containing group is hydrophilic (because of its charge) and interacts If a drop of phospholipids is placed in water, it
readily with water. may spontaneously form a sphere-shaped
structure known as a micelle, in which the
• In a membrane, phospholipids are arranged into a structure called a hydrophilic phosphate heads face the outside
bilayer, with their phosphate heads facing the water and their tails and the fatty acids face the interior of this
pointing towards the inside. This organization prevents the structure. Formation of micelle is energetically
hydrophobic tails from coming into contact with the water, making it a favored.
low-energy, stable arrangement.
Steroids
• Steroids are another class of lipid molecules, identifiable by their
structure of four fused rings. Although they do not resemble the
other lipids structurally, steroids are included in lipid category
because they are also hydrophobic and insoluble in water.
• All steroids have four linked carbon rings and several of them, like
cholesterol, also have a short tail. Many steroids also have an –OH
functional group attached at a particular site (cholesterol) ; such
steroids are also classified as alcohols, and are thus called sterols.
• Cholesterol, the most common steroid, is mainly synthesized in
the liver and is the precursor to many steroid hormones. These
include the sex hormones testosterone and estradiol, which are
secreted by the gonads (testes and ovaries). Cholesterol also
serves as the starting material for other important molecules in
the body, including vitamin D and bile acids, which aid in the
digestion and absorption of fats from dietary sources. It’s also a
key component of cell membranes, altering their fluidity and
dynamics.