AP Bio Notes
AP Bio Notes
Scientific Principles
Learn the nature of science and scientific methods, such as observing, studying, and experimenting.
See how a hypothesis helps scientists understand the world.
What Is Science?
Science is a branch of knowledge and the systematic study of the universe and all it encompasses -
one that is based upon facts, observation, and experimentation.
Some people love science and others less so. Maybe you are one of the individuals who thinks it's
hard. Quite frankly, it should be hard. I'm sure you know that anything worthwhile in life is a difficult
endeavor but always worth fighting for.
And, of course, you reap what you sow. And if you work hard at it, you gain far more than grains of
knowledge and the gift of persistence that comes from toiling in the field of science. You gain a
specific kind of mindset for the rest of your life - a mindset that allows you to logically observe and
learn the truths of the world that are based on evidence and objective understanding.
Such a mindset can open new and exciting worlds for you. Maybe you'd like to find out why Mentos
makes pop fizz. Or perhaps you want to learn how fossils allow us to look back in time. Further still,
you may want to find a cure for a disease. Science allows you to do all of this and more.
Lesson Summary
Science is a branch of knowledge and the systematic study of the universe and all it encompasses
that is based upon facts, observation, and experimentation. Science is not dogma, a set of
principles laid out as being unquestionably true.
And science should not be mistaken for pseudoscience, which is a false or fake science or system
of beliefs that looks like it's based on scientific ideas but actually doesn't employ or obey the rules of
science. Scientists use hypotheses, theories, and laws to explain our world.
A hypothesis is a single assertion, a proposed explanation of something based on available
knowledge, for something yet to be explained that is subject to further experimentation. A theory is a
system of assumptions that generalizes results of well-confirmed hypotheses in order to apply them
to a wide range of circumstances. A Scientific Law is a description of observable natural
phenomena.
Learning Outcomes
Once you have finished this lesson, you should be prepared to:
What is a Scientist?
A scientist is a person who has expertise or performs research in a specific field of science. In order
to understand what a scientist is, it is important to define science. Science is the practice of studying
and attempting to understand the world and how it works, through observations and experiments.
Fields like Herpetology, the study of reptiles, or Biology, the study of life, or Anthropology, the study
of humans, are all fields of science.
The people who are experts in and study these fields, scientists, are attempting to understand and
explain the world. They do this through observation and experiments in a very specific method,
known as the scientific method. The scientific method is a step-by-step process that scientists
follow to understand how or why something works; ask a question, form a hypothesis, test the
hypothesis, analyze data, and draw conclusions. This process usually leads scientists to ask more
questions and repeat the scientific method over and over again, with different topics. When a
hypothesis is supported by experiments, other scientists analyze the data, make their own
observations, replicate the experiments, and test the hypothesis themselves in a process called peer
review.
While the job may vary, the general qualities of a scientist remain the same. Scientists
possess analytical skills, are detail-oriented, and are very organized. These qualities ensure the
research they do is careful and does not contain errors. Scientists are also open-
minded and unbiased, which allows them to be accepting of results that disprove their hypothesis
and able to change their hypothesis when needed. Lastly, scientists are adaptable. Adaptability
helps scientists to keep experiments on track when they do not go as planned. Along with these
general qualities, scientists also possess specific traits that make them successful.
Observation
Observation is something noticed through careful use of the senses: sight, hearing, smell, taste, or
touch. Observation is the very beginning of the scientific method because scientists are constantly
observing things about the natural world, and then asking questions such as how or why?
Observation is such a key trait of a scientist as it drives the process of asking questions.
Curiosity
Curiosity is the desire to learn more about something. As part of the scientific method, curiosity goes
along with asking a question and wanting to answer it. Curiosity is what drives scientists to try to
understand and explain the world.
Logic
Logic is a reasonable way of thinking about something, usually systematically. Scientists use logic
when forming a hypothesis, or an if, then statement. If thing A happens, then thing B will be the
outcome. The "if, then" process of thinking is very logical, and allows for something to be tested and
either proven or disproven. Logic is very important when scientists come up with a potential
explanation for how or why something happens.
Creativity
Creativity is the ability to make something or come up with ideas, alternatives, and possibilities.
Scientists must be creative when designing experiments or solving complex issues. In science,
things do not always go as planned, and creativity is extremely important to be able to keep
experiments on track or to design a new science tool.
Skepticism
Skepticism is the practice of doubting or challenging the truth of something. Scientists must be
skeptical because questioning their own hypothesis, methods, and results, can help them always
provide sufficient evidence to back up their claims. Skepticism also leads scientists to question other
scientists' work and replicate the experiments.
Objectivity
Scientists must be objective because it helps them avoid bias. Bias is the tendency to deviate from
the truth in the scientific method. For example, if a scientist left out data from their report that did not
support their hypothesis, this would be biased research. If a scientist is always objective, even with
respect to their own hypothesis and methods, they can avoid things that would stray them away from
the truth
Peer Review
Peer review is the process where proposed explanations, claims, or publications are evaluated
and/or tested by experts in that particular field. For example, if a scientist published their research
study about exercise and happiness, other scientists in the field would evaluate the publication,
analyze the data, and replicate the experiment to get their own results. These other scientists would
then come up with their own conclusions, either supporting or disproving the results of the original
work. Peer review is an important trait of scientists because it will shed light on any bias and drive
fellow scientists further toward the truth.
Observation
Curiosity
Logic
Creativity
Skepticism
Objectivity
Peer review
In addition to the traits of a scientist, good scientists share common values. Some values of
scientists include honesty and integrity, keeping them truthful, along with hard
work and determination to stay the course when the pursuit of truth gets tough. Lastly, good
scientists share the value of humility to evidence, changing their hypothesis when evidence shows
it is appropriate. These qualities, characteristics, and values of good scientists have led to many
breakthroughs and discoveries in various fields, such as the creativity and observation used by Jane
Goodall in primate research, or the curiosity and skepticism used by Pavlov in discovering the
concept of classical conditioning.
Centrifugal- The term centrifugal means the tendency to move away from the center of an
object, or entity.
Biology- The term "biology" means the study of life or living organisms.
Hydrocephalus - This scientific term is used to describe a medical condition where fluid is
found in the brain.
Photosynthesis - The process by which plants use sunlight and water to produce their own
nutrients.
Hydrogenation - The addition of hydrogen in a chemical reaction.
Ornithology - The study of birds.
Hypothesis - An educated explanation for a certain phenomenon.
Ecology - The study of the ecosystem, or environment.
Heterotroph - An organism that relies on external sources of nutrients.
Autotroph - An organism that makes its own nutrients via chemical processes.
Auditory or Verbal- One who learns best via hearing new information is considered an
auditory or verbal learner. A person who learns this way may prefer learning listening to
lectures on certain topics or discussing new information out loud rather than learning by
reading or writing information.
Visual- An individual who is in need to see something to help with the understanding of a
new concept is considered a visual learner. A visual learner may prefer looking at pictures or
charts to understand new material or may benefit by watching videos.
Hands-on- A person who needs to learn by performing a task themselves or to physically
touch an object to gain an understanding of it is a hands-on learner. These individuals
typically benefit from laboratory components of classes, like performing chemical reactions or
other types of experiments, as well as learning through movement.
Some individuals even learn best using a combination of the study styles. Approaches to learning
and studying can be holistic or analytical. Holistic learning tends to group new concepts or ideas
with those that have already been learned by the individual. For example, a person would first need
to know the basic anatomy of an animal cell before being able to learn about cellular respiration.
Analytical learning divides concepts or material into small subsections. This works well for studying
concepts that include classifying certain organisms or entities. For example, when learning about the
taxonomy of living things, organisms are categorized into three separate domains, which are the
largest groups. These groups are broken down into kingdoms, which are broken down into phyla,
and so on.
Lesson Summary
To summarize and refresh, this lesson focused on science terms. Greek and Latin languages
contribute to most scientific vocabulary. Greek is used because most of the first scientists and
researchers were Greek, and Latin is used often in the naming of organisms since it is universal.
Word parts (such as prefixes, roots of words, and suffixes) and morphemes were discussed in this
lesson, and how it is helpful to break down scientific terminology into smaller parts to gain a better
understanding of the material. The primary unit of a word is called the root, the word part before
the root is the prefix, and the word part appearing only after the root is the suffix.
Learning styles can be auditory, where students learn by hearing, visual, where learning occurs
via sight through pictures and charts, hands-on, where new information is best understood in
practice or a combination of two or all three. Holistic learning uses old information that was already
learned to better understand new ideas. The analytic learning approach breaks concepts into
smaller sections, or subdivided parts for the individual to process new information.
Some say Aristotle or Galileo first utilized the scientific method, but while they certainly used
empirical science, they did not outline a procedure like this
Muslim scholar Ibn al-Haytham first made an outline for a series of steps long before Bacon
in the early 1000s, and even recommended replication to help ensure good data
Issac Newton helped refine the process after Bacon in the later 1600s and emphasized the
importance of inductive and deductive reasoning
Every scientist that modifies the process to fit their experiments and discover new knowledge
is a part of the evolution of this method even today
Each scientist must use the scientific method as a guide to design their own experiment
Psychologists studying human behavior may be able to use a survey as part of their
experimental design, while ecologists studying bee behavior will need to employ different
methods
Scientists studying extinct species will need to use very different tools than those studying
extant species
Philosophers will not be collecting quantitative data like geneticists, but will focus on
qualitative data instead
1. Ask a Question
2. Conduct Background Research
3. Formulate a Hypothesis
4. Design and Conduct an Experiment
5. Analyze the Data
6. Draw a Conclusion
Scientific Method Steps in Order
The scientific method has an order, but it often gets shaken up and parts get re-worked and re-tested alon
1. Question
The question always comes first. This step involves making an observation about something in the
world and asking a question about it. That question may be about why the phenomenon happens,
how it occurs, what it is, how it relates to other things, etc.
After the first step, there is sometimes variation. Sometimes a hypothesis comes quickly, before the
background research is done; sometimes the experimental setup is determined during the
background research, before the hypothesis. Here the steps are listed in the standard order, but
realize that this may vary.
2. Background
The background should come next. This is where the scientist will research the existing knowledge
about the topic of the investigation. A scientist should always use credible sources. Preferably, they
should look at other experiments that have been conducted in the field of study and analyze these
results in relation to the question from the first step. For example a researcher could be:
3. Hypothesis
Once the scientist has gathered sufficient background information, they can form a hypothesis. This
is an educated prediction to answer the question. It must be specific and testable. Often they can be
worded in the form of an "If, then" statement. For example:
If a plant has 8 hours of sunlight exposure, then it will grow taller than plants with less
exposure to sunlight.
If a child experiences trauma, then they are more likely to develop depression than a child
who does not experience trauma.
4. Experiment
Designing an experiment that accurately tests the hypothesis is vital for credible conclusions. If the
hypothesis is about plant height, then the experiment cannot measure how many leaves the plant
grows.
Experiments must be controlled in all ways except for the Independent Variable (IV), or the change
that is being tested. The Dependent Variable (DV) is the thing that will be measured in the
experiment. Its correlation to the independent variable will be what the scientist is looking for.
To test if exposure to a chemical will cause higher rates of cancer, an experimental setup
could be: IV = exposure to chemical, DV = prevalence of cancer. Two groups of mice that
are all the same age and gender are fed the same amount of food and water and kept in the
same kind of cages. The only difference is that one group is exposed to the chemical and the
other is not. The experimenter can then look at how many mice develop cancer in each
group and compare the numbers.
When looking at the impacts of exercise on diabetes, the experiment could look like this: IV =
1 hour of walking every day for a month, DV = resting blood sugar levels. Two groups of
adults with type 2 diabetes, sedentary lifestyles, and no other comorbid disorders have their
resting blood sugar levels measured. For the next month, one group walks for one hour at a
moderate pace every day, and the other group does not change their habits (there can be no
changes in diet or anything else in either group except the addition of the walking). At the
end of the month, both groups have their resting blood sugar tested again and changes are
measured.
5. Analysis
After the data has been collected, it must be analyzed to determine if any differences
are significant. Significance is very important in science; it is determined through statistical testing
and it tells the scientist whether the differences they observe are truly due to the independent
variable, or if they may be due to chance.
If a difference is very small, or if there is large variation in each experimental group, then
statistics may determine the difference insignificant.
It is also possible that a difference will not look like much, but will still be significantly due to
the IV.
6. Conclusion
Once the data has been analyzed, the scientist can determine whether it supports or rejects the
proposed hypothesis.
If the data supports the hypothesis, then it should be retested for accuracy. If the data rejects the
hypothesis, then the experimenter can test alternative explanations for the question. Regardless, the
scientific method never really ends, it always cycles back around.
There was no significant difference in the aggressive behaviors of dogs with brown hair
versus those with black hair. The hypothesis was supported.
Students with ADHD showed significantly higher rates of frustration in the classroom
compared to students without ADHD. The hypothesis was rejected.
Peer review occurs when scientists that work in the same field as the proposed publication
evaluate the work and can either agree that it seems credible, or raise questions and
propose changes to attain validity of the experiment. Once a hypothesis has been peer-
reviewed extensively, it can become a scientific theory, or an explanation for the natural
world that brings together facts and hypotheses and is strongly supported by empirical
research.
A scientific theory is much more serious than some people think. A theory in colloquial usage may
describe any kind of idea about why or what something is, but a scientific theory is strongly
supported and widely believed to be true. It would take large discoveries and likely new technologies
to reject a theory.
To emphasize the significance, here are some common scientific "theories":
Bias becomes a problem when scientists allow their beliefs to filter their data
The scientific method is designed to try to avoid bias due to personal beliefs, but it is not
perfect. Biases are prejudices towards an outcome that may impact the way data is interpreted.
If someone uses bias when forming their hypothesis, that may not have a huge affect on
their experiment's validity, but if they use bias in how they collect their data and form their
conclusions? That could lead to serious problems in how accurate and trustworthy their
claims will be.
Here is an example of how bias can damage the credibility of an experiment's results:
Christina is studying the correlation between smoking cigarettes and the development of lung
cancer.
Christina likes smoking cigarettes, and does not believe that it causes cancer.
When she collected data from her experiment, the numbers were close.
The first statistical test she ran showed a significant correlation between smoking cigarettes
and cancer, but when she ran a second test it showed no significant correlation. She chose
to use the test that showed no difference in her paper, because it aligned with her beliefs.
To avoid this error, scientists use peer review and repeat testing to flag these kinds of errors and
correct them before the experiment's data is published or accepted as valid.
Lesson Summary
This lesson covered the following key terms:
Scientific Method: a series of steps used by scientists to answer questions about the world
Question: the problem that an experiment is looking to answer
Background: data available in books/journals/the internet from previous tests that can
provide information about the experiment's subject
Hypothesis: a potential answer for the research question that can be tested
Experiment: a test that provides data that directly answers a question
Empirical Data: information obtained through experience or observation
Conclusion: support or rejection of the experiment's hypothesis produced from the
experiment's data
Independent Variable: the thing being tested in an experiment, it should be the only
variable changed
Dependent Variable: the thing being measured in an experiment
Significance: statistical determination of whether change observed is due to chance
Peer review: scientist from the field evaluate the work and determine validity
Scientific Theory: a hypothesis that is widely supported by empirical research
Biases: cause for prejudice towards a certain outcome
Experiments that follow this procedure can be replicated and if a hypothesis is supported enough
times, then it may become a theory. Biases can make an experiment invalid if they impact the way a
scientist follows this procedure.
Verification questions
Theory questions
Experimental questions
The first main type of scientific question is a verification question. Verification questions can be
answered by collecting data through measurement or observation. A verification question might ask
about the characteristics or properties of an organism or phenomenon.
The next type of scientific question is a theory question. A theory question should not be confused
with a conversational hypothetical question, which is sometimes posed as an imaginative exercise. A
scientific theory question is not a fictional, what-if scenario. Theory questions depend on having
some prior knowledge of the phenomenon being asking about. We use this prior knowledge to
develop an explanation of what or how something happens. Then, we can form a question based on
that theoretical framework.
The last type of scientific question is an experimental question. Experimental questions are useful
for comparing what happens when an element of a system is altered. To answer an experimental
question, an individual needs to identify the variables involved and then set up a way to test them.
Usually, an experimental question focuses on two variables at a time. There is an independent
variable, which is the one that will be manipulated (the cause), and a dependent variable, which is
the one that shows the result (the effect) of the experiment. The question can be phrased as a
hypothesis or as a statement that predicts an outcome. The results of the experiment will be used to
answer the question.
It may be useful to see an example of a question that is not scientific to better understand what
makes a question scientific. An example of an unscientific question is: "What is my dog thinking
about?" This is not a scientific question because it is not testable. There is not currently a way to
collect data about what a dog is thinking. Questions about opinions, such as "What is the best
color?" are also not scientific, because they are not objective.
1. Think about a subject that needs investigation, or that generates feelings of curiosity.
Brainstorm possible questions about that topic. Write them down and do not worry about
whether they are good questions yet.
2. Review the questions and cross out the ones that are not testable.
3. Eliminate the questions that are too broad or that have many possible answers.
4. Narrow down the question so it meets the requirements of what makes a question scientific.
If the questions seem unscientific at first, it is still possible to craft them into good scientific
questions. Review the questions on the list and notice which ones might need improvement. Is there
a question that is too broad or that is not testable? Compare the question to the list of what makes a
question scientific. Which characteristics should a good scientific question have? Reword the
question until it fits the scientific question definition outlined in this lesson.
Scientific Questions Examples
To assist with building skills in writing the three types of scientific questions, here are some scientific
questions examples.
An example of a verification question is, "What is the density of water?" This is a verification
question because it can be answered by measuring the mass and volume of water to calculate its
density. Another example of a verification question is, "What are the characteristics of burned
wood?" This question can be answered using observational data to describe the answer.
An example of a theory question is, "Behaviorist theory suggests that giving a dog a reward after
performing a trick will result in the dog learning to associate the behavior with the reward. Will the
same be true for my puppy?" This is a question based on prior knowledge and an established
theory, and it can be tested. Someone can test the theory by using the training method with a puppy.
The results of the test should be collected so they can analyze the data and use it to answer the
question.
An experimental question is typically used to compare the effects of one variable on another. An
example experimental question is, "Will seeds soaked in sugar water sprout sooner than seeds
soaked in plain water?" In this question, the independent variable is the type of water (sugar or
plain), and the dependent variable is the time it takes for the seeds to sprout. The question can also
be stated as a hypothesis, which incorporates a prediction about the anticipated result of the
experiment. Here is a possible hypothesis for this experiment: "Seeds soaked in sugar water will
sprout sooner than seeds soaked in plain water. This is a testable, experimental hypothesis."
Lesson Summary
The ability to design scientific questions is an essential skill for inquiry and learning. A scientific
question typically falls into one of these three categories: a verification question, a theory
question, or an experimental question. There are several key characteristics of scientific
questions. A good scientific question must be objective and testable. A scientific question should not
be so broad that it has many variables and possible answers. Scientific questions that focus on
an independent variable and a dependent variable are usually easier to understand than less-
defined questions. Scientific questions may be answered using data that is measured or observed.
Scientific theory explains why things occur the way they do after significant repeated
experiments.
Scientific law is a pattern, typically established through an equation. The data collected
through repeated experiments support a relationship between experimental variables.
Experimental design process is conducted throughout all disciplines of science for the advancement of
Lesson Summary
The experimental design is an invaluable process in the scientific community to provide data to
support or refute a hypothesis. The experimental investigation begins with an observation that
leads to a question that helps the experimenter to come to an informed decision on their hypothesis.
The five steps in the experimental design are defining variables, formulating hypotheses, creating an
experimental design process, assigning subjects, and measuring the dependent variable.
When conducting an experiment, it is important to create a good experiment by researching and
understanding the content to be conducted, and have the five steps of the experimental design
completed with care and completeness.
Agrarian Societies
Around 12,000 years ago, human societies started to change. Once living a nomadic life as hunter-
gatherers where we were constantly on the move season by season, year by year, humans started
to settle down and live in specific locations. This was the development of agrarian societies.
An agrarian society is a society where cultivating the land is the primary source of wealth: where
the focus is on agriculture and farming.
It's not clear why or how humans came to the decision to become farmers. Perhaps it was through
experimentation or humans just wanted more food. But whatever the reason, this was a dramatic
shift in the way humans lived. Although we may not think of it as such, this was a time in human
history where humans were making great technological advances. Farming technology, while
relatively modest at first, began to develop.
Technology and economic activity go hand in hand. As humans gained farming skills, for the first
time they were able to produce more food and goods than they needed. And this gave the
opportunity for trade with other groups of humans. This economic activity continued to drive better
technology, allowing humans to produce even more food and so on. Eventually, it got to the point
that some humans could work exclusively on farming, while others could have different jobs, like
making buildings or crafts. This idea of having each person with a specific job is called division of
labor, and it was a super efficient way for humans to work.
The move to agrarian societies wasn't all good, however. Hunter-gatherers were constantly on the
move but that also kept them lean, strong and healthy. They burned all the calories they ate and had
lives that contained a lot of leisure time. Farming was often hard and time-consuming, and humans
would work themselves to the bone to gain their advantage.
Industrial Revolution
Thousands of years later, as our technological knowledge improved, science began to develop.
Through science, we understood the world better than ever and could use that knowledge to our
advantage, taking control of the resources available to us.
The Industrial Revolution was the change to mechanical manufacturing processes between
approximately 1760 and 1830. It allowed us to use machines to create iron and other metals and
introduced the heavy use of steam engines and coal. Division of labor really got into full swing in this
part of history as even the factories that produced goods divided their workers into jobs. Each
person would do the same task over and over, which was much more efficient. Economic activity
was booming, and making food and goods had never been so easy and cheap.
These advances drove the creation of super-powers and empires. The British Empire, for example,
was built on it, as were the expansions of French and Spanish territories later. Similar to the
development of agrarian societies, the change was a mixed bag. Workers were often exploited and
had to deal with terrible conditions. Life expectancy was extremely low during this time, and the rich
gained the greatest benefits.
Lesson Summary
Around 12,000 years ago, human societies started to change from a nomadic life as hunter-
gatherers to agrarian societies. An agrarian society is a society where cultivating the land is the
primary source of wealth: where the focus is on agriculture and farming.
As humans gained farming skills, for the first time they were able to produce more food and goods
than they needed. And this gave the opportunity for trade with other groups of humans. This
economic activity continued to drive better technology, allowing humans to produce even more food
and so on. Eventually it got to the point that some humans could work exclusively on farming, while
others could have different jobs, like making buildings or crafts. This idea of having each person with
a specific job is called division of labor, and it was a super efficient way for humans to work. The
move to agrarian societies wasn't all good, however: farmers were less healthy and had less leisure
time than hunter-gatherers.
Thousands of years later, as our technological knowledge improved, science began to develop,
which, in turn, led to the Industrial Revolution. The Industrial Revolution was the change to
mechanical manufacturing processes between approximately 1760 and 1830. It allowed us to use
machines to create iron and other metals and introduced the heavy use of steam engines and coal.
Though there were many benefits, workers were often exploited and had to deal with terrible
conditions.
This trend only continues today in the digital revolution. As computers and communication
technology have improved over the course of the late 20th century until today, our ability to produce
large amounts of goods and services cheaply improves all the time.
There are positive impacts and negative impacts of science and technology on human activity. But
you could argue that the positives outweigh the negatives. Medical technology has improved in leaps
and bounds over the 20th century, and life expectancy is higher than it's been in all of human history.
One thing is sure - science, technology and economic productivity will continue to have huge
impacts on the way human society develops.