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Arpit Shrivastava143

The document contains Python code for cleaning and processing COVID-19 test data and patient information using pandas. It includes functions to standardize dates, clean test results, infer vaccination status, and filter out invalid patient records based on age and oxygen saturation levels. The output shows the cleaned data for patients after processing.

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vidushivani021
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12 views4 pages

Arpit Shrivastava143

The document contains Python code for cleaning and processing COVID-19 test data and patient information using pandas. It includes functions to standardize dates, clean test results, infer vaccination status, and filter out invalid patient records based on age and oxygen saturation levels. The output shows the cleaned data for patients after processing.

Uploaded by

vidushivani021
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as DOCX, PDF, TXT or read online on Scribd
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Name : Arpit Shrivastava

Reg No : RA2211033010143
Section : AB2

Question 1.

CODE :

import pandas as pd
from datetime import datetime
csv_data = pd.read_csv("covid_data.csv")
json_data = pd.read_json("covid_data.json")
excel_data = pd.read_excel("covid_data.xlsx")
df = pd.concat([csv_data, json_data, excel_data], ignore_index=True)
def standardize_date(date):
for fmt in ("%m/%d/%Y", "%Y-%m-%d", "%d-%m-%Y"):
try:
return pd.to_datetime(date, format=fmt).strftime('%Y-%m-%d')
except:
continue
return pd.NaT # Return NaT for unparsable dates
df['test_date'] = df['test_date'].apply(standardize_date)
df['test_date'] = pd.to_datetime(df['test_date'], errors='coerce') # Ensure
datetime type
def clean_test_result(result):
result = str(result).strip().lower()
if result in ['positive', 'pos', 'covid+ve']:
return 'Positive'
elif result in ['negative', 'neg', 'covid-ve']:
return 'Negative'
else:
return pd.NA

df['test_result'] = df['test_result'].apply(clean_test_result)
df.sort_values(by='test_date', ascending=False, inplace=True)
df.drop_duplicates(subset='patient_id', keep='first', inplace=True)
def infer_vaccination_status(row):
if pd.isna(row['vaccination_status']):
if str(row.get('visit_reason', '')).lower() == 'vaccination' or \
str(row.get('hospital_visit', '')).lower() == 'vaccination':
return 'Vaccinated'
else:
return 'Unknown'
return row['vaccination_status']
df['vaccination_status'] = df.apply(infer_vaccination_status, axis=1)
print(df.head())

#OUTPUT

Simulated Sample Input (Combined)

patient_ test_dat test_res vaccination_sta visit_reas


id e ult tus on

12/01/20 Vaccinatio
101 POS NaN
21 n

2021-11-
101 Positive NaN Checkup
01

01-10-
102 Negative Vaccinated Fever
2021

2021-10- Vaccinatio
103 Covid+ve NaN
05 n

05-12-
104 NEG. NaN Headache
2021

2021-12- Vaccinatio
105 covid-ve NaN
01 n

After Cleaning & Processing:


patient_id test_date test_result vaccination_status
0 101 2021-12-01 Positive Vaccinated
1 102 2021-10-01 Negative Vaccinated
2 103 2021-10-05 Positive Vaccinated
3 104 2021-12-05 Negative Unknown
4 105 2021-12-01 Negative Vaccinated

Question 2.

CODE :

import pandas as pd
data = {
'patient_name': ['joHN doE', 'Alice SMITH', 'Dr. Michael Brown', 'sarah
O\'connor'],
'age': [35, -10, 45, 200],
'spo2': [98, 35, 89, 102],
'hospitalized': [None, None, None, None]
}
df = pd.DataFrame(data)
def clean_name(name):
name = str(name).strip()
if name.lower().startswith('dr.'):
name = name[3:].strip()
return name.title()
df['patient_name'] = df['patient_name'].apply(clean_name)
df = df[(df['spo2'] >= 40) & (df['spo2'] <= 100)]
df = df[(df['age'] >= 0) & (df['age'] <= 120)]
df['hospitalized'] = df.apply(
lambda row: 'Yes' if row['spo2'] < 90 else 'No' if pd.isna(row['hospitalized'])
else row['hospitalized'],
axis=1
)
print(df)

#OUTPUT
Simulated Output:
patient_name age spo2 hospitalized
0 John Doe 35 98 No
1 Michael Brown 45 89 Yes

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