Arginine Metabolism
Arginine Metabolism
1School of Biological and Chemical Engineering, Zhejiang University of Science and Technology, Hangzhou, China | 2Youxian Shop (Zhejiang) Food Co.
Ltd., Huzhou, China
Funding: This work was supported by National Natural Science Foundation of China, 32101912; Leading the Charge with Open Competition program in
Wenzhou, ZNF2023009; Basic scientific research project of Zhejiang University of Science and Technology, 2023JLZD009.
ABSTRACT
Ethyl carbamate (EC), primarily formed by the reaction between urea and ethanol, is a natural carcinogen prevalent in fermented
alcoholic beverages. Urea is an arginine metabolite produced by Saccharomyces cerevisiae. Previous studies have shown that
BTN2 influences arginine metabolism. In this study, we compared the effects of BTN2-modified strains on key metabolites, en-
zymes, and transcriptional gene expressions in the arginine metabolic pathway, and assessed cell growth and oxidative damage
under different ethanol stresses. It revealed that the knockout of BTN2 inhibited arginine intake and promoted urea reduction.
RT-qPCR results demonstrated that BTN2 regulate arginine transportation, catabolism, and urea degradation by modulating the
expression of GAP1, CAN1, CAR1, and DUR1,2. Moreover, the results showed that BTN2 enhanced ethanol tolerance and allevi-
ated cellular damage. These findings provide a promising method for reducing arginine uptake by Saccharomyces cerevisiae and
consequently urea accumulation in wine.
1 | Introduction two strategies: knocking out the arginase gene (Wu et al. 2014;
Guo et al. 2016) or increasing the expression of urea-degrading
Due to its distinctive flavor and excellent nutritional value, enzyme and transporter proteins genes (Zhang et al. 2017; Wu,
Chinese yellow rice wine is popular among local and for- Xie, et al. 2020). Although these approaches effectively reduced
eign consumers (Jiao et al. 2014). However, it contains several urea content, the utilization pathway of arginine was disrupted,
hazardous compounds, notably ethyl carbamate (EC) (Chen which led to arginine accumulation in the fermentation broth,
et al. 2022; Wang et al. 2021). EC is produced through a chem- ultimately impacting the flavor and quality of the product (Zhao
ical reaction between ethanol and carbamoylated compounds et al. 2013). Therefore, in recent years, researchers have focused
such as urea, citrulline, carbamoyl phosphate, cyanide, and on the arginine transport pathway to control the entry of argi-
diethyl pyrocarbonate, with urea serving as the main precur- nine into yeast (Zhang et al. 2016; Zhang and Hu 2018).
sor. Urea mainly originates from raw materials and through the
accumulation of arginine metabolites in Saccharomyces cerevi- The arginine metabolism pathway directly influences the pro-
siae (Gowd et al. 2018). Therefore, it is of great importance to duction and elimination of urea. The transportation and me-
inhibit urea formation during fermentation. Previous studies tabolism of arginine in S. cerevisiae is illustrated in Figure 1.
have explored approaches to reduce urea production in S. cer- Arginine uptake in the cell membrane was facilitated by mul-
evisiae using genetic modification technology with a focus on tiple transporter proteins, that is, Can1p, Alp1p, and Gap1p.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium,
provided the original work is properly cited.
© 2025 The Author(s). Food Science & Nutrition published by Wiley Periodicals LLC.
Hoffmann identified Can1p as a specific transporter protein for et al. 2002). However, the specific effect of BTN2 on the arginine
arginine transport from the extracellular space to the intracellu- metabolic pathway and its role in reducing extracellular urea ac-
lar environment (Hoffmann 1985). Alp1p has been recognized as cumulation remain unexplored. Therefore, we utilized S. cerevi-
a potential arginine transporter protein, and the overexpression siae BY4742, BTN2 knockout, and over-expressing strains to study
of ALP1 significantly enhanced arginine transport (Regenberg arginine metabolites and related transcriptional gene changes, to
et al. 1999). Moreover, Gap1p was a generalized transporter pro- elucidate the potential mechanisms by which BTN2 knockout
tein that transports all amino acids (Van Zeebroeck et al. 2009). strains reduced arginine uptake, leading to decreased urea accu-
These three transporters regulated one another to maintain a mulation. Meanwhile, BTN2 was reported to be associated with
balance of arginine transport (Zhang et al. 2016). After being ethanol tolerance. Under severe ethanol stress, the v-SNARE
transported intracellularly, arginine followed two pathways: binding protein encoded by BTN2 was involved in intracellular
the vacuolar basic amino acid transporter (Vab2p) transported protein transport, played a role in protein deposition in the nu-
approximately 90% of arginine into the vacuole, where arginine cleus (Kato et al. 2018), and was particularly effective in remov-
existed as free arginine (Shimazu et al. 2005; Zhou et al. 2020), ing denatured proteins caused by severe ethanol stress in yeast
playing a crucial role in regulating the expression of genes in- (Kato et al. 2019). In this study, we also investigated research on
volved in arginine utilization and inhibiting arginine biosyn- the ethanol tolerance of BTN2-modified strains. The findings re-
thesis. The remaining arginine was broken down into urea and vealed the mechanism of arginine transport regulated by BTN2
ornithine by the arginase (Car1p). Urea was further degraded and provided a potential application of BTN2-modified strains to
to CO2 and ammonia by urea amidolyase (Dur1,2p) or excreted reduce urea and EC.
extracellularly by urea transporter proteins (Dur4p), while orni-
thine was then converted to proline by ornithine aminotransfer-
ase (Car2p) (Ghaddar et al. 2014; Zhang et al. 2016). 2 | Materials and Methods
A Previous study showed that when BTN2 was downregulated, 2.1 | Chemical and Materials
the rate of arginine uptake was lowered in the mixed fermenta-
tion of S. cerevisiae and L. brevis, leading to a reduced EC con- L-arginine monohydrochloride, L-ornithine monohydrochloride,
centration (Fang et al. 2019). Therefore, BTN2 was considered urea, diacetyl monoxime, thiosemicarbazide, Malondialdehyde
a potential key regulator of arginine metabolism. Additionally, (MDA) Content Assay Kit, and Modified BCA Protein Assay
Btn2p encoded by BTN2 interacts biochemically and function- Kit were obtained from Sangon Biotech Corporation (Shanghai,
ally with Rhb1p, which inhibits the activity of arginine permease. China). 2,4-dinitrofluorobenzene (DNFB) was purchased from
BTN2 knockout failed to localize Rhb1p in the peripheral cellular Energy Chemical Corporation (Anhui, China). QuantiChrom
structures, resulting in reduced arginine uptake by Can1p argi- Arginase Assay Kit and QuantiChrom Urease Assay Kit were ob-
nine permease (Chattopadhyay and Pearce 2002; Chattopadhyay tained from BioAssay Systems Corporation (Hayward, CA, USA).
2.4 | Arginine Related Metabolites Analysis 2.6 | Real Time Quantitative PCR (RT-qPCR) Assay
Urea concentration was assayed using the described method by The RT-qPCR primers were designed and synthesized by Shanghai
Fang et al. 2014. L-arginine and L-ornithine were determined by Sangong Biological Engineering Corporation. The sequences are
HPLC-V WD method with an Agilent HPLC system 1260. The shown in Table 1. Total RNA was extracted using Yeast RNA Kit
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R6870. After DNA removal from the genome, it was held at 42°C (SD) of three determinations. Significant differences between
for 2 min and then placed at 4°C. cDNA synthesis from total RNA treatments were determined by SPSS (V20.0) software and using
was performed using the PrimeScript RT reagent Kit with gDNA Duncan's multiple range test, and statistically significant differ-
Eraser. The qPCR amplification was performed for a 30 μL sample ences were determined at p < 0.5. Asterisks denote significant
containing qPCR Mix (15 μL), primer (0.5 μL each) and template differences between strains (*p < 0.05; **p < 0.01; ***p < 0.001;
DNA (2 μL). All amplifications consisted of an initial amplification ****p < 0.0001).
at 95°C for 3 min, followed by 40 cycles at 95°C for 15 s, 62°C for
20 s, and 72°C for 20 s. Relative quantification of amplified genes
was performed using the 2−∆∆Ct method. 3 | Results and Discussion
Tolerance of yeast strains to various ethanol stresses was com- Cell growth curves and dry cell weight were obtained to deter-
pared by spot dilution on solid media (Cheng et al. 2016). After cul- mine whether BTN2 affected S. cerevisiae growth or not. The
turing in SC1 medium at 30°C for 48 h, the cell suspensions were data presented in Figure 2 indicated that BTN2∆ grew slightly
collected and diluted serially. 2.5 μL of each 10-fold dilution (10−1– slower than WT. However, there was no significant difference
10−6) was spotted onto YPD plates added with various concentra- in growth performance or dry cell weight between the BTN2∆
tions of ethanol (0%, 3%, 6% and 9%, v/v). The yeast cell growth was and the WT group. Both strains entered the arrest phase at sim-
evaluated after cultivation at 30°C for 72 h with the plates wrapped ilar periods and displayed comparable logarithmic phase trends.
in sealing film to avoid ethanol evaporation (Morard et al. 2019). In contrast to the WT, BTN2↑ demonstrated superior growth
performance with an 11.73% increase in dry cell weight, with a
Ethanol tolerance was also assessed using a liquid growth assay shorter logarithmic growth period and an earlier entry into the
(Cheng et al. 2016). Yeast cells were pre-cultured in YPD (30°C, stationary phase of growth.
220 rpm) for 24 h, transformed into 100 mL of SC1 with ethanol
at a final concentration of 0%, 3%, 6%, and 9% (v/v) respectively,
and then incubated at 220 rpm, 30°C for the logarithmic phase 3.2 | Effect of BTN2 on Key Substances and Enzyme
(16 h and 24 h). Activities in Arginine and Urea Metabolism
Malondialdehyde (MDA) was also examined to determine the Arginine, urea, and ornithine are key substances in the metab-
cellular damage caused by ethanol in different yeast strains (Liu olism of arginine, in which urea can react spontaneously with
et al. 2024). MDA was detected by the MDA Content Assay Kit. ethanol to produce EC (Shalamitskiy et al. 2023). Arginine can
be degraded by arginase to produce urea and ornithine, the
precursor of citrulline, which can also affect the production of
2.8 | Statistical Analysis EC (Wei et al. 2020). The consumption of arginine and the ac-
cumulation of extracellular urea and ornithine were detected.
Dates were analyzed using Origin 2021 software and GraphPad We selected three specific time points (24, 48 and 72 h) in the
Prism 9. The results are presented as mean ± standard deviation logarithmic, stationary, and decline phases to determine key
FIGURE 2 | The impact of BTN2 on S. cerevisiae cell growth in YPD medium containing arginine. (A) The growth curves of WT, BTN2∆, and
BTN2↑. (B) Dry cell weight of WT, BTN2∆, and BTN2↑.
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FIGURE 3 | (Continued)
intracellular substances and enzyme activities involved in argi- 3.3 | Transcriptional Analysis of Genes Related to
nine and urea metabolism. Arginine and Urea Metabolism
During the cultivation period, the trend of changes in extracel- To further elucidate the correlation between BTN2 and arginine
lular key substances was consistent among the three strains: and urea metabolism, the transcript expression levels of rele-
BTN2↑ > WT > BTN2∆ (Figure 3A–C). Extracellular arginine vant genes in S. cerevisiae were assayed by RT-qPCR at the three
consumption, as well as urea and ornithine content, gradually selected time points, and the results are shown in Figure 4. At
increased with the prolongation of cultivation time until 48 h. 72 h, compared to WT, all tested genes were down-regulated ex-
Moreover, a decrease in arginine consumption was observed cept for GAP1 (1.51-fold) in BTN2↑ (Figure 4C). This indicated
in WT and BTN2↑ after 48 h (Figure 3A), which may be at- that BTN2 had little transcriptional regulatory effect on arginine
tributed to the release of generated arginine into the extracel- and urea catabolism in S. cerevisiae during the decline phase,
lular space under the action of arginine synthase during the but still influenced arginine transport.
late growth phase. In contrast, the consumption of arginine in
BTN2∆ increased consistently, suggesting that BTN2 knock- In the logarithmic phase (24 h) (Figure 4A), BTN2∆ caused sig-
out may disrupt the function of arginine synthase. At the end nificantly up-regulated expression of CAR1 (1.36-fold), CAN1
of cultivation, urea content of BTN2↑ increased by 76.05%, (2.34-fold), ALP1 (1.52-fold), GAP1 (13.03- fold), and DUR1,2
whereas urea content of BTN2∆ decreased by 17.62% compared (1.35-
fold). In contrast, BTN2↑ led to the down- regulation of
to WT. Interestingly, urea concentration of WT, BTN2∆, and CAR1 (0.16-fold), ALP1 (0.34-fold), GAP1 (0.34-fold), and DUR1,2
BTN2↑ gradually reached equilibrium after a decreasing (0.48-fold) expression. In the stationary phase (48 h) (Figure 3B),
trend over certain cultivation time periods (48, 60, and 72 h). both BTN2∆ and BTN2↑ triggered the up-regulation of CAR1,
Notably, BTN2↑ had significantly higher extracellular key sub- CAR2, CAN1, and GAP1. Therefore, it could be assumed that the
stances levels compared to WT and BTN2∆. This might be due yeast may have taken up arginine during the stationary phase,
to the 11.73% increase in dry cell weight/ml of the constructed leading to the simultaneous up-regulation of CAR1 and CAR2 in
BTN2 over-expression strain. BTN2-modified strains. Furthermore, the complex composition
of the YPD medium, which contains various amino acids, along
In addition, key intracellular substances and enzyme activities with the mutual regulation of CAN1, GAP1, and ALP1, resulted
were measured at three selected time points (Figure 3D–H). in the concurrent up-regulation of CAN1 and GAP1 in the BTN2-
BTN2∆ demonstrated a higher arginase activity compared to modified strains. However, the impact of BTN2 on arginine me-
WT and BTN2↑, leading to an increased level of arginine deg- tabolism could still be assessed by examining the fold-change in
radation. As a result, BTN2∆ exhibited higher intracellular upregulation. Notably, BTN2↑ significantly increased the expres-
ornithine levels. BTN2∆ also showed higher urease activity, sion of CAN1 (4.97-fold) and GAP1 (16.67-fold). These findings in-
resulting in a higher concentration of urea decomposition. dicate that BTN2 may affect arginine metabolism in S. cerevisiae
Conversely, BTN2↑ exhibited lower arginase activity compared by affecting arginine transport during growth.
to WT. Although sometimes BTN2↑ had higher urease activity, a
large amount of arginine was transferred from the extracellular From the logarithmic phase (24 h) to the stationary phase (48 h),
to the intracellular environment, resulting in higher intracellu- the expression of CAR1 and CAR2 in BTN2∆ consistently showed
lar arginine and urea levels. up-regulation while folds reduced from 13.08 to 5.41 in GAP1 and
from 2.44 to 1.98 in CAN1. Alkim et al. (2013) also discovered application of BTN2 modified strains in Chinese rice wine fer-
that in cobalt stress-tolerant S. cerevisiae, BTN2 was downregu- mentation, their tolerance to ethanol was carefully investigated.
lated, whereas CAR1 was upregulated. Until the decline phase In a study of an evolved S. cerevisiae strain tolerant to oxidative
(72 h), GAP1 and CAN1 showed down-regulation. Conversely, the stress, Kocaefe-Ozsen et al. (2022) reported ethanol tolerance
expression of CAN1 (4.97-fold) and GAP1 (16.67-fold) in BTN2↑ and upregulation of BTN2 compared to the original reference
exhibited a significant increase, and GAP1 was still up-regulated strain. Growth of the three strains was compared in solid
until the decline phase. These results indicated that BTN2 influ- YPD medium at different ethanol concentrations, as shown in
ences CAN1 and GAP1. Herein, it could be assumed that knocking Figure 5A. No significant differences in cell growth were ob-
out BTN2 would reduce arginine uptake in S. cerevisiae and ulti- served at low ethanol concentrations (3% and 6%); however, the
mately decrease the extracellular urea concentration. growth of these cells was strongly inhibited under severe etha-
nol stress (9%). Notably, the growth status of the three strains
was BTN2↑ > WT > BTN2∆.
3.4 | Effects of BTN2-Modified Strains Under
Ethanol Stress on S. cerevisiae To validate the spot assay results, we carried out liquid cultiva-
tions with various ethanol concentrations. Comparing the dry
Espinazo-Romeu et al. (2008) found that Btn2p is important cell weight at 16 and 24 h (Figure 5B), the three strains showed
for amino acid transport and for ethanol resistance. For further varying degrees of ethanol tolerance, with the most significant
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FIGURE 5 | Response of BTN2 modified strains to ethanol stress. (A) Growth of BTN2 modified strains on YPD solid media under various etha-
nol stresses by spot dilution assay. (B) Comparison of the growth of BTN2 modified strains at 16 h and 24 h in cultures under various ethanol stresses
by dry cell weight assay. (C) Comparison of the degree of lipid peroxidation of cell membranes of BTN2 modified strains in cultures under various
ethanol stresses by MDA assay.
inhibition observed at 9% ethanol concentrations. After being MDA levels increased 1.70, 2.23, and 1.59 times in WT, BTN2∆,
cultivated with 9% ethanol for 24 h, WT, BTN2∆, and BTN2↑ cell and BTN2↑, respectively, compared with 0% ethanol conditions.
densities decreased by 84.55%, 89.67%, and 78.74%, respectively, Ethanol increased MDA content, indicating ethanol- induced
compared with non-stressed conditions. In further cell damage oxidative stress in the cells. These results showed that BTN2
assays, the degree of cell membrane peroxidation at 24 h was enhanced the cell's ethanol tolerance and membrane integrity
determined using MDA (Figure 5C). Under 9% ethanol stress, while decreasing ethanol-induced oxidative damage.
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