IEICE Transactions on Information and Systems
Online ISSN : 1745-1361
Print ISSN : 0916-8532
Regular Section
Extraction of Informative Genes from Multiple Microarray Data Integrated by Rank-Based Approach
Dongwan HONGJeehee YOONJongkeun LEESanghyun PARKJongil KIM
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JOURNAL FREE ACCESS

2011 Volume E94.D Issue 4 Pages 841-854

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Abstract
By converting the expression values of each sample into the corresponding rank values, the rank-based approach enables the direct integration of multiple microarray data produced by different laboratories and/or different techniques. In this study, we verify through statistical and experimental methods that informative genes can be extracted from multiple microarray data integrated by the rank-based approach (briefly, integrated rank-based microarray data). First, after showing that a non-parametric technique can be used effectively as a scoring metric for rank-based microarray data, we prove that the scoring results from integrated rank-based microarray data are statistically significant. Next, through experimental comparisons, we show that the informative genes from integrated rank-based microarray data are statistically more significant than those of single-microarray data. In addition, by comparing the lists of informative genes extracted from experimental data, we show that the rank-based data integration method extracts more significant genes than the z-score-based normalization technique or the rank products technique. Public cancer microarray data were used for our experiments and the marker genes list from the CGAP database was used to compare the extracted genes. The GO database and the GSEA method were also used to analyze the functionalities of the extracted genes.
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© 2011 The Institute of Electronics, Information and Communication Engineers
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