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This resolves an inconsistency for validating new and old datasets #372

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Merged
merged 2 commits into from
May 8, 2025
Merged

This resolves an inconsistency for validating new and old datasets #372

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83d34e4
This resolves an inconsistency for validating new and old datasets
jjacobson95 May 1, 2025
e5912eb
Schema fix
jjacobson95 May 1, 2025
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23 changes: 13 additions & 10 deletions build/docker/Dockerfile.upload
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Original file line number Diff line number Diff line change
Expand Up @@ -11,15 +11,18 @@ RUN apt-get update && \
apt-get install -y git curl gnupg && \
rm -rf /var/lib/apt/lists/*

# Install GitHub CLI (gh)
RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | \
gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg && \
echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | \
tee /etc/apt/sources.list.d/github-cli.list > /dev/null && \
apt-get update && \
apt-get install -y gh && \
rm -rf /var/lib/apt/lists/*
# # Install GitHub CLI (gh)
# RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | \
# gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg && \
# echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | \
# tee /etc/apt/sources.list.d/github-cli.list > /dev/null && \
# apt-get update && \
# apt-get install -y gh && \
# rm -rf /var/lib/apt/lists/*


# RUN git clone https://github.com/PNNL-CompBio/coderdata.git
# WORKDIR /usr/src/app/coderdata

RUN git clone https://github.com/PNNL-CompBio/coderdata.git
WORKDIR /usr/src/app/coderdata
ADD schema schema
ADD scripts scripts
2 changes: 1 addition & 1 deletion schema/coderdata.yaml
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Expand Up @@ -188,7 +188,7 @@ classes:
- source
- study
attributes:
drug_drug_2:
improve_drug_1:
description: improve_drug_id of first drug
improve_drug_2:
description: imrrove_drug_id of second drug
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