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Plant-Food-Research-Open

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  1. assemblyqc assemblyqc Public

    A Nextflow pipeline for evaluating assembly quality

    Nextflow 37 7

  2. calisim calisim Public

    A toolbox for the calibration and evaluation of simulation models.

    Python 15 2

  3. genepal genepal Public

    A Nextflow pipeline for genome and pan-genome annotation

    Nextflow 14 7

  4. moiraine moiraine Public

    An R package to construct Multi-Omics Integration Reproducible Analyses in R.

    R 7 1

  5. TEgenomeSimulator TEgenomeSimulator Public

    TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.

    Python 3 2

  6. FieldNBalance FieldNBalance Public

    Nitrogen balance model components and test procedures

    Jupyter Notebook 2 4

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