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pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an up-to-date API documention please check our website:

Computational statistical mechanics of field-responsive polymer chains

Python code to model spinodal decomposition using the Cahn-Hilliard equation.

Single polymer chain simulation; linear or circular configuration, optional and adjustable excluded volume force.

Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

Fit sticky-reptation model to experimental linear viscoelasticity data

Revolutionary Loop Quantum Gravity framework with 48c Supraluminal Navigation System. Production-ready FTL technology with zero exotic energy requirements and 24.2 billion× sub-classical energy enhancement through LQG polymer corrections.

Code to model active loop extrusion on chromatin using hybrid MD-MC.

Quantum field theory analysis in curved spacetime geometries. Studies vacuum fluctuations, energy conditions, and field behavior in exotic spacetime configurations for theoretical physics research.

Polymer-enhanced fusion simulation framework studying LQG physics integration with tokamak systems. Includes HTS materials modeling, coil optimization, liquid metal divertors, and economic analysis for fusion energy research.

Integration of Loop Quantum Gravity with quantum field theory. Studies matter-geometry coupling, polymer field interactions, and quantum gravitational effects on field dynamics.

Code used for publication in Physical Review E: "Polymer dynamics under tension: Mean first passage time for looping", by Wout Laeremans, Anne Floor den Ouden, Jef Hooyberghs and Wouter G. Ellenbroek.

a tool for the analysis of multiplexed FISH (Fluorescence In Situ Hybridization) data

Use PyConforMap to generate a simple scatter plot to map conformational landscapes of intrinsically disordered proteins, and quantify conformational diversity.

Code used for publication in Physical Review Research: "Theoretical models for tension-dependent DNA looping time", by Wout Laeremans and Wouter G. Ellenbroek.