read-overlapping

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CMU-SAFARI / BLEND

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)

bioinformatics genome-analysis genome-assembly blend read-mapping de-novo-assembly minimizers strobemers seed-matching fuzzy-seeds read-overlapping spaced-seeds

Updated May 10, 2023
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