An Invisible Universe: Diversity of Virus, Viroid, Prion and Bacteria
An Invisible Universe: Diversity of Virus, Viroid, Prion and Bacteria
Dechoso, Rochelle R.
Terrago, Nika
TABLE OF CONTENTS
Title Page
TITLE PAGE 1
TABLE OF CONTENTS 2
INTRODUCTION 3
OBJECTIVE 4
DISCUSSION
Viruses
Meaning/Description 4
Functions 4
Structure 5
Examples 6
Viroid
Meaning/Description 8
Functions 8
Structure 9
Examples 9
Prions
Meaning/Description 10
Functions 11
Structure 11
Examples 12
Bacteria
Meaning/Description 13
Functions 13
Structure 14
Examples 16
Differences between Viruses, Viroids, Prions from one another, 18
and from Bacteria
Similarities of Viruses, Viroids, Prions, and Bacteria 20
CONCLUSION 22
BIBLIOGRAPHY 23
3
INTRODUCTION
Microbiology is a world under the microscope, which becomes the invisible world of
microorganisms that take up most of the part of the earth as they are found all over the places
and even inside human bodies. These complex communities of microbes which include
bacteria, fungi, viruses, and other microorganisms play a vital role in controlling most aspects
of the ecosystem which live as a free-living state, parasitic, or as a host. Infectious agents are
inanimate objects that can spread disease when they come into contact with a living host cell.
While prions, viroid, and viruses are thought to be infectious agents like bacteria, they are not
thought of as living things. Viruses, viroid, and virusoids are distinct organisms that interact
and even the decomposition of materials; however, some of the microbes are pathogenic,
microbes that cause diseases. A growing understanding of the fundamental role of microbes
in the human immune system has revolutionized the field of immunology and microbiology
over the past few years. Scientists studied the type of cellular composition, morphology,
mode of nutrition, movement, and reproduction of each microorganism that have paved the
way for the future of medicine, industry, and research. However, many microbes still become
a mystery in the field of biology like the origin of the virus or how the prions reproduce. This
paper seeks to make such information as understandable as possible so that students from a
variety of biology backgrounds can deepen their grasp of these intriguing things. Therefore,
this paper will show how the virus, viroid, virions, and bacteria differ from each other to
Objective:
This report aims to differentiate viruses, viroid, prions from one another, and from
bacteria.
Specifically, its:
1. Meaning/Description
2. Functions
3. Structures
DISCUSSION
Viruses
Meaning/Description:
A virus is an infectious microorganism made up of a nucleic acid segment (DNA or
RNA) wrapped by a protein coat. Viruses are unable to multiply on their own; instead,
they must infect cells in order to utilize the components of the host cell to generate
copies of themselves. A capsid, which is a protein shell, surrounds a virus' DNA or
RNA genome.
Viruses are small obligate intracellular parasites, which by definition contain either a
RNA or DNA genome surrounded by a protective, virus-coded protein coat. Viruses
may be viewed as mobile genetic elements, most probably of cellular origin and
characterized by a long co-evolution of virus and host.
Functions:
Viruses are inert outside the host cell. Small viruses, e.g., polio and tobacco mosaic
virus, can even be crystallized. Viruses are unable to generate energy. As obligate
intracellular parasites, during replication, they fully depend on the complicated
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Structure:
Most commonly found structures in viruses are capsid, nucleic acid genome, and
envelope (not found in every virus).
their linear, thin, thread-like appearance and they may also be called rod-
shaped or helical) and head-tail (a kind of hybrid between the first two
capsids, which basically icosahedral head attached to a filamentous tail).
2. Nucleic acid genome - is made up of DNA or RNA that tucked inside the capsids. It
involves the storage and expression of genetic information. It allows the genetic
information to the offspring. But note that passing genetic material of the virus will
not occur without the host cell of other species.
3. Envelope - some viruses also have an external lipid membrane known as an
envelope, which surrounds the entire capsid that helps protect the virus from
the host’s immune system. The envelope may also have receptor molecules
that can bind with host cells. They make it easier for the virus to infect the
cells.
Examples:
Hepatitis A virus
outbreak often can be traced to uncooked food or food that has been handled after
cooking.
Feline leukemia virus (FeLV) is one of the most common infectious diseases
in cats, affecting between 2 and 3% of all cats in the United States. Infection rates are
significantly higher (up to 30%) in cats that are ill or otherwise at high risk.
Fortunately, the prevalence of FeLV in cats has decreased significantly in the past 25
years since the development of an effective vaccine and accurate testing procedures.
Cats persistently infected with FeLV serve as sources of infection for other
cats. The virus is shed in saliva, nasal secretions, urine, feces, and milk of infected
cats. Cat-to-cat transfer of the virus may occur from a bite wound, during mutual
grooming, and (rarely) through the shared use of litter boxes and feeding dishes.
Transmission can also take place from an infected mother cat to her kittens, either
before they are born or while they are nursing. FeLV does not survive long outside a
cat's body – probably less than a few hours under normal household conditions.
Nipah Virus
Adenovirus
Measles
Viroid
Meaning/Description:
Infectious agents known as viroids are entirely made up of naked RNA and lack any
kind of protein coat or other layer of protection. Plants are the only living things that
are infected by viroids, which replicate at the expense of the host cell. Viroid genomes
are small circles of single-stranded RNA ranging from 250 to 400 bases long.
Viroids are small, circular RNA pathogens which infect a variety of agricultural
plants and can cause economically significant illnesses. They do not contain proteins,
but they do provide a variety of RNA structural components that interact with host
factors.
Functions:
Mature viroids consist of a noncoding, covalently closed circular RNA that is able to
autonomously infect respective host plants. Thus, they must utilize proteins of the
host for most biological functions such as replication, processing, transport, and
pathogenesis. Therefore, viroids can be regarded as minimal parasites of the host
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machinery. They have to present to the host machinery the appropriate signals based
on either their sequence or their structure. Here, we summarize such sequence and
structural features critical for the biological functions of viroids.
Structure:
Structurally, viroids are smaller than viruses and possess circular strands of
ribonucleic acids (RNA’s) with no protein coating. Viroids contain five
structural/functional domains such as, conserved central domain, pathogenic
domain, variable domain, left terminal domain, and right terminal domain.
Examples:
Potato spindle tuber viroid (PSTVd) is a quarantine pest detected in seeds and
tubers of potato in some East European countries (Belarus, Russia, and Ukraine;
EPPO/CABI, 1997). Potato Spindle Tuber Viroid (PSTVd) is an EU listed quarantine
pathogen of potatoes which causes stunting of the plant and malformation and
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cracking of tubers. The main host is potatoes but the disease also affects tomatoes and
solanaceous ornamentals.
Tomato apical stunt viroid (TASVd) is a serious pathogen of tomato. Pathways for
introduction include tomato seedlings, tomato seeds and ornamentals. If spread to a
tomato, considerable losses could result.
Citrus exocortis is a disease of citrus plants, caused by the Citrus exocortis viroid
(CEVd). It can cause stunted growth and reduced yields in affected plants. The
disease is also sometimes called "scalybutt". CEVd can also infect tomato plants. The
resulting disease is sometimes called "tomato bunchy top disease".
Cucumber pale fruit, one reason that cucumber fruit turns white is a fungal disease
called powdery mildew. This problem begins on the upper surface of the fruit and the
cucumbers may look as though they have been dusted with flour.
Prions
Meaning/Description:
A prion is a misfolded rogue form of a normal protein (PrPc) found in the cell. This
rogue prion protein (PrPsc), which may be caused by a genetic mutation or occur
spontaneously, can be infectious, stimulating other endogenous normal proteins to
become misfolded, forming plaques.
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A prion is a protein that changes its three-dimensional shape, which can cause
disease. Prions are found in the brain and are resistant to proteases. The function of
prions is not fully understood, but they are believed to play a role in intracellular
signaling and cell adhesion.
Functions:
Prions are known to cause various forms of transmissible spongiform encephalopathy
(TSE) in humans and animals. TSE is a rare degenerative disorder that affects the
brain and nervous system. The accumulation of rogue proteins causes the brain tissue
to become sponge-like, killing brain cells and forming holes in the tissue, leading to
brain damage, loss of motor coordination, and dementia. Infected individuals are
mentally impaired and become unable to move or speak. There is no cure, and the
disease progresses rapidly, eventually leading to death within a few months or years.
Structure:
Prion proteins (PrP) found in our body and those that cause diseases are structurally
different. Some of them are even resistant to proteases (enzymes that degrade protein). We
will look at both isoforms.
1. PrPC – These proteins are found on the membranes of cells. They are believed
to play important roles in intracellular signaling and cell adhesion. However,
research is ongoing as the issues related to its function haven’t been solved.
2. PrPSc – This disease-causing prion is protease-resistant. It changes the PrPC
by affecting its conformation. The change in structure changes how it interacts
and interconnects with proteins! The 3-D structure of these prions is not
known, but what we do know is that they have more beta-sheets than the usual
alpha-helix structure. This prion also forms highly structured amyloid fibers.
The end of the fiber acts as a template for other free proteins to attach. Only
similar prions with similar amino acids can bind! Cross-species binding is
very rare, but it is possible.
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Examples:
Kuru
Is a prion disease that now occurs rarely if ever. It causes rapid deterioration
of mental function and loss of coordination. This disease was once common among
natives of the Papua New Guinea highlands and was transmitted by cannibalism that
was part of the native burial ritual. Prions were probably acquired during a burial
ritual, which involved eating tissues of a dead relative as a sign of respect (called
13
Fatal insomnia
Is a rare prion disease that interferes with sleep and leads to deterioration of
mental function and loss of coordination. Death occurs within a few months to a few
years. Fatal familial insomnia and sporadic fatal insomnia differ from other prion
diseases because they affect predominantly one area of the brain, the thalamus, which
influences sleep.
Bacteria
Meaning/Description:
Functions:
The bacteria in our bodies help degrade the food we eat, help make nutrients available
to us and neutralize toxins, to name a few examples. Also, they play an essential role
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Structure:
Cell Envelope - made up of two to three layers: the interior cytoplasmic membrane,
the cell wall, and -- in some species of bacteria -- an outer capsule.
Cytoplasm - The cytoplasm of bacterial cells is where the functions for cell growth,
metabolism, and replication are carried out. It is a gel-like matrix composed of water,
enzymes, nutrients, wastes, and gasses and contains cell structures such as ribosomes,
15
a chromosome, and plasmids. The cell envelope encases the cytoplasm and all its
components.
Flagella - Flagella (singular, flagellum) are hairlike structures that provide a means of
locomotion for those bacteria that have them. They can be found at either or both ends
of a bacterium or all over its surface. The flagella beat in a propeller-like motion to
help the bacterium move toward nutrients; away from toxic chemicals; or, in the case
of the photosynthetic cyanobacteria; toward the light.
Pili - Many species of bacteria have pili (singular, pilus), small hairlike projections
emerging from the outside cell surface. These outgrowths assist the bacteria in
attaching to other cells and surfaces, such as teeth, intestines, and rocks. Without pili,
many disease-causing bacteria lose their ability to infect because they're unable to
attach to host tissue. Specialized pili are used for conjugation, during which two
bacteria exchange fragments of plasmid DNA.
Ribosomes - Ribosomes are microscopic "factories" found in all cells, including
bacteria. They translate the genetic code from the molecular language of nucleic acid
to that of amino acids—the building blocks of proteins. Proteins are the molecules
that perform all the functions of cells and living organisms. Bacterial ribosomes are
16
similar to those of eukaryotes, but are smaller and have a slightly different
composition and molecular structure. Bacterial ribosomes are never bound to other
organelles as they sometimes are (bound to the endoplasmic reticulum) in eukaryotes,
but are free-standing structures distributed throughout the cytoplasm. There are
sufficient differences between bacterial ribosomes and eukaryotic ribosomes that
some antibiotics will inhibit the functioning of bacterial ribosomes, but not
eukaryotes, thus killing bacteria but not the eukaryotic organisms they are infecting.
Examples:
Salmonella Typhi
Salmonella Typhi is a strain of bacteria that lives only in humans. It causes a
bacterial infection of the intestinal tract and occasionally of the bloodstream (which is
called typhoid fever). It is uncommon in the United States, with most cases acquired
during foreign travel to developing countries. Salmonella enterica typhi is a gram-
negative bacterium that is responsible for typhoid fever and has been a burden on
developing nations for generations.
Helicobacter pylori
17
Rhizobium
Is a genus of bacteria associated with the formation of root nodules on a plant.
These bacteria live in symbiosis with legumes. They take in nitrogen from the
atmosphere and pass it on to the plant, allowing it to grow in soil low in nitrogen.
Streptococcus
A heterogeneous group of Gram-positive bacteria, has broad significance in
medicine and industry. Various streptococci are important ecologically as part of the
normal microbial flora of animals and humans, some can also cause diseases that
range from subacute to acute or even chronic. Among the significant human diseases
attributable to streptococci are scarlet fever, rheumatic heart disease,
glomerulonephritis, and pneumococcal pneumonia.
Staphylococcus
Is a genus of Gram-positive bacteria in the family Staphylococcic from the
order Bacillales. Under the microscope, they appear spherical (cocci), and form in
grape-like clusters. Staphylococcus species are facultative anaerobic organisms. A
group of spherical bacteria, the best-known species of which are universally present in
great numbers on the mucous membranes and skin of humans and other warm-
blooded animals.
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Size:
Viroids are extremely small in size, ranging from 246 to 467 nucleotide (nt)
long genome and consisting of fewer than 10,000 atoms.
Nucleic Acid:
Viroids are single-stranded, covalently closed circular and linear RNA
molecules with substantial intramolecular complementarity; they exist as strongly
base-paired rods in their original state.
Structure: Unlike viral nucleic acids, viroids are not encapsidated.
Host: Plants
Reproduction:
19
Inside the host, viroids only reproduce by the help of the host cell but do not
perform any protein synthesis. The replication mechanism involves RNA polymerase
II, an enzyme normally associated with synthesis of messenger RNA from DNA,
which instead catalyzes “rolling circle” synthesis of new RNA using the viroid’s RNA
as template.
PRIONS
Size: Bacteria are larger than viruses with about 1000 nm in size.
Nucleic Acid: A single, circular chromosome is present
Structure: Bacteria contain a Peptidoglycan/ Lipopolysaccharide cell wall.
However, scientists have discovered that a group of bacteria possess proteins thought to exist
only in eukaryotes. (Planctomycetes-Verrucomicrobia-Chlamydiae)
Reproduction: bacteria are living cells, reproducing independently
BACTERIA VIRUS
Bacteria do not need a host organism for Viruses replicate only inside the host.
reproduction.
Bacteria are living organisms. Viruses are considered as organic structures which
interact with living organisms, rather than a living
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organism.
Bacteria are larger, about 1000 nm in Viruses are smaller, about 20-400 nm in size.
size. They are visible under a light They are visible under the electron microscope.
microscope.
Bacteria contain a Peptidoglycan/ Viruses don’t have a cell wall. A protein coat is
Lipopolysaccharide cell wall. present instead.
Bacteria show metabolism within the cell. There is no metabolism inside the viral particle.
Reproduction happens through binary Virus invades the host cell, makes copies of
fission and conjugation. genetic material and proteins, and releases new
particles by destroying the cell.
Bacteria can be either beneficial or Viruses are usually harmful, and can be useful in
harmful (Pathogens). genetic engineering.
Both Viroids and Prions are self-propagative, i.e. one viroid or one prion is capable of
making multiple copies of itself in the cell.
•Both of them require a living cell as host for propagation.
CONCLUSION
Differences are evident, and infectious diseases are prevalent in this world.
Occurrence of diseases are mainly because of the pathogens lurking around the environment.
Viruses, viroids, prions, and bacteria are pathogens that cause diseases to living organisms.
Even though they share the same characteristic of being a disease-causing acellular and
cellular microorganism, they differ in many factors, such as their morphology (structures,
size,), function, host, mechanism of multiplication and reproduction, and in the presence of
their nucleic acid. Under suitable conditions, the shape and size of microbes are relatively
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