Orgmed Supplemental Notes
Orgmed Supplemental Notes
Medicinal Chemistry – incorporation of chemistry and biology in the research for the discovery and
design of new and better therapeutic chemicals and development of these chemicals into new
medicines.
Drug
• Any substance intended for use in diagnosis, cure, mitigation, treatment or prevention of
disease or to affect or alter the structure or function of the body of man or other animals
• Origin
o Natural: from plants and animals
o Synthetic: from pure synthesis of naturally occurringcompounds
o Semi-synthetic: natural intermediate of some drugs could be used for the synthesis
of a desired product
• Medicinal
o Chemotherapeutic: fight malignant/tissues and microorganisms
o Pharmacodynamic agents: acts on various functions of the body
• Types of disease treate
o Infectious: caused by microorganism may be person-to-person, or by outside
agents
o Non-infectious: diorders caused by genetic malfunction, environmental factors,
stress , or old age
o Non-disease:
▪ Alleviation of pain and symptom
▪ Prevention of pregnancy
▪ Anesthesia
PHARMACOPHORE – The section of the structure which is responsible for its pharmacological
activity
NUCLEUS – Section of the structure which is responsible for its pharmacological activity
STRUCTURE-ACTIVITY RELATIONSHIP (SAR) – How a structure affects the effect of the drug
Goals
• Leads and natural sources from folklore medicine are assayed for their many types of
pharmacologic actions
• Costly, time-consuming
DRUG-RECEPTOR INTERACTION
Selectivity
Ligand-Receptor/Enzyme-Substrate Hypotheses
• Receptor Hypothesis
o By Paul Ehrlich = receptors, selective toxicity
o Side chains on the surfaces of cells were complementary to the dyes
• Lock and Key Theory
o Substrate and active site are completely complementary in shape to the active site
• Induced Fit theory
o “A Hand in a Glove Model”
o The substrate and active site are not completely complementary, but there is still
some complementarity
o The enzyme conforms to the shape of the substrate
Hypothesis of Clark
• “Occupation Theory”
• Max pharmacologic effect can be obtained if ALL receptors are occupied
• Obeys Law of Mass Action: when a drug combines with a receptor, it does so at a rate which
is dependent on the conc of the drug and the conc of the receptor
• Only applies to full agonists
Hypothesis of Paton
• “Rate Theory”
• The effectiveness of a drug does not depend on the actual occupation of the receptor
but by obtaining proper stimulus
• Affinity: strength of attraction of the ligand to the receptor; determines drug potency
Hypothesis by Baker
Easson-Stedman Hypothesis
Based on Solubility
• Solubility
o Max amount of solute that can be dissolved in a solvent at equilibrium
o Saturation level – solvent cannot dissolve the solute anymore
• Dissolution
o Process by which a substance forms a solution in a solvent
• Surface area, Particle size
o SA: how much exposed area of a drug molecule can interact with solvent
o Inc surface area = dec particle size
• Stability
o Maintain the physicochemical, therapeutic and microbial properties during the time
of storage and usage by the patient
• Log of the Partition coefficient (Log P)
o Calculate and predict hydrophilicity and lipophilicity of functional groups or
compounds
o Ratio of drug conc in octanol to that in water
Based on Stereochemistry
Parts
Intestinal Digestion
Absorption
• Physiologic: rate and extent of disappearance of drug from the site of administration
• Pharmacologic: rate and extent of drug entry into the systemic circulation
• Factors
o Surface area: ↑surface area, ↑ absorption
o Degree of perfusion: ↑ perfusion, ↑ absorption
o Dose size administered: ↑ dose size, ↑ absorption
o pH of absorbing environment
o Gastric Emptying Time (GET)
✓ ↑ GET, ↓ GER, ↓ Absorption
✓ ↓ GET, ↑ GER, ↑ Absorption
PRODRUGS
PHASES OF METABOLISM
Phase 1: Functionalization
• Non-synthetic reactions
• Provide a polar functional group or “handle” to the drug molecule via direct introduction of
the functional group or modifying or “unmasking” existing functional groups
• CYP 450 Oxidation
o Microsomal mixed oxidase system
o Mixed function oxidases/monooxygenases
o Found in lungs, intestines, skin
o Requirements:
▪ Heme protein with iron (Fe3+: rest/oxidized, Fe2+: active/reduced)
▪ NADH/NADPH cofactors
▪ H2 atom to be abstracted from the substrate
▪ Oxygen
o Results in activation of O2 as electron acceptor
▪ Oxidation of substrate
▪ Formation of one molecule of H2O
Oxidation Inc O
Dec electron
Inc unsaturation
Dec H
Reduction
Inc H
Reduction Inc H
Inc electrons
Dec unsaturation
Dec O
Phase 2: Conjugation
1. Glucuronide conjugation
• Most common conjugation reaction
• Requires Glucuronic acid (from the oxidation of glucose)
• Glucose-1-P + UTP → UDP Glucose → [UDPG-DH, 2 NAD] → UDP-Glucuronate
o O-glucuronidation: APAP
o Acylglucuronidation: Ibuprofen
o N-glucuronidation: p-aminosalicylic acid
• Enzyme: UDP-glucuronosyltransferase
• Activated cofactor: uridine-5’-diphospho-a-D-glucuronic acid
• Not yet developed in neonates - Less expressed in <28 days
• Ex. Chloramphenicol, APAP, Morphine
o Morphine-3-glucuronide – convulsant
o Morphine-6-glucuronide – analgesic
2. Sulfate conjugation
• Most important for steroid hormones, heparin, chondroitin, catecholamines,
thyroxine, bile acids and phenolics
• Metabolites have low pKa, almost totally ionized, highly soluble and excretable via
urine (sa madaling salita, tanan drugs naa diri kay highly excretable)
• Transfer of sulfone from 3’-phosphoadenosine-5’-phosphosulfonate by
sulfotransferase
• PAPS is formed from inorganic sulfate and STP
• Sulfate + ATP → [ATP Sulfonylase; APS Phosphokinase] → PAPS + ADP + PPi
• Sulfate pool is limited and easily depleted/saturated
• Major process in neonates
3. Amino acid conjugation
• Forms an amide with aromatic or alkyl carboxylic acids
o Glycine, glutamate (major); aspartate; taurine, serine
o Glycine: mammals
▪ Reduced in infants and elderly
▪ Benzoic acid + glycine = hippuric acid
▪ Salicylic acid + glycine = salicyluric acid
• Glutamine: Humans and other primates
o Liver and kidney
• Minor pathway
4. Glutathione conjugation
• For detoxification of chemically reactive electrophilic compounds
• Tripeptide: glutamylcysteinylglycine
• Does not require activation; -SH readily attacks electrophilic centers
o Conjugation by Glutathione-S-transferase
o Removal of glutamate by Glutamyl transferase
o Removal of glycine by Cysteinylglycinase
o Forms a mercaptopuric derivative, that is easily excreted in urine
5. N-acetylation
• Transfer of acetyl CoA to primary and aliphatic and aromatic amines, amino acids,
hydrazines, sulfonamides
o Sulfonamides, hydralazine, isoniazid, procainamide
o Isoniazid undergoes phase 2 before phase 1 metabolism
• Secondary and tertiary amines are not acetylated
• Catalyzed by N-acetyltransferase – a liver mitochondrial enzyme which uses Acetyl
CoA as coenzyme
o Polymorphism leads to fast and slow acetylator phenotypes
o FAST acetylators: prone to drug-induced toxicities
▪ Eskimos, Asians
o SLOW acetylators: eliminate the drug rapidly
▪ Europeans, Caucasians, Egyptians
• Ex. Sulfonamide, Hydralazine, Isoniazid, Procainamide (SHIP)
• May cause activation – acetylcholine
6. Methylation
• Occurs on O/N/S atoms on endogenous or drug molecules
• Leads to less polar and active metabolites
o Ex. Norepinephrine to Epinephrine
• Catalyzed by methyltransferase, which transfers a methyl from S-adenosyl
methionine (SAM)
o ATP + Methionine = [methionine adenosine transferase]=> S-AM
• Minor pathway: Does not enhance water solubility but is able to deactivate the drug
o Ex. NE, DA, 5HT, Histamine
o Penicillin
▪ Old Source: Penicillium notatum
▪ New: P. chrysogenum, P. rubens
▪ MOA: Interfere with transpeptidation or cross-linking or peptidoglycan
chains
▪ STRUCTURE: Beta lactam ring with a thiazolidine ring (Para matandaan ang
iyahang structure, bahay siya na may garage)
▪ NUCLEUS: 6-aminopenicillanic acid (6-APA)
▪ WOF: penicillins can cause allergies that’s why before giving it to the px, you
need to ask first. IF PX IS ALLERGIC = give MACROLIDES
TYPE OF PENICILLIN EXAMPLE REMARKS
NATURAL PENICILLINS Penicillin G • IV form – AQUEOUS Pen G
• IM form – Benzathene Pen G
(gives depot effect; given if
compliance is an issue;
RAPIDLY excreted)
• DOC for syphilis
• DOC susceptible Gram +
cocci
• TAKE NOTE: Pen G is ini-
inGect, parenteral
Penicillin V • Acid stable
• For minor infections only due
to RESISTANCE
• TAKE NOTE: Pen V = V is for
Vunganga, oral route
ANTISTAPHYLOCOCCAL/ Methicillin • Prototype
PENICILLINASE-RESISTANT • Acid-labile
PENICILLINS (Narrow- • Phased out in the market
spectrum) because of high incidence of
nephrotoxicity; interstitial
nephritis
• Oldest penicillin used in
MRSA infection along with
(remember CONDOM)
C – loxacillin
O – xacillin
N – afcillin
D – icloxacillin
O - xacillin
M - ethicillin
Nafcillin • Alternative to methicillin
• Can be given to patients with
renal problems
ISOXAZOYL Penicillins • Halogenated analogs
(remember OCD) • DICLOXACILLIN is best
ABSORBED ORALLY
Oxacillin • Treatment of
Cloxacillin staphylococcal infections
Dicloxacillin (e.g. impetigo)
AMINOPENICILLINS (Broad- Ampicillin • Prototype (BCH:
spectrum) Bacampicillin, Cidacillin,
Hetacillin)
• POOR GI absorption
• Mostly given IV
• DOC for L. monocytogenes
Amoxicillin • better GI absorption = given
PO
• For respiratory infections
• Prone to resistance
ANTIPSEUDOMONAL Carboxypenicillin (may • Increase Gram (-) activity
PENICILLIN ‘car’ sa name) • Used in combos for
Pseudomonas aeruginosa
Carbenicillin
Ticarcillin
Ureidopenicillin • Piperacillin – most potent
(remember PAM) • Piperacillin + Tazobactam
(has the broadest
Piperacillin spectrum of all the
Azlocillin pencillins
Mezlocillin
o Beta-lactamase inhibitors
▪ DO NOT HAVE significant antibacterial activity, instead they bind to and
inactivate beta-lactamases
▪ Little to no antimicrobial activity
▪ Potentiates the activity of B-lactams against Gram + cocci (bale
ginatabangan lang niya ang other drug na antibiotic para madeliver iyang
effect; POTENTIATION ANG MAHITABO 1+0=2)
▪ EXAMPLE PREPARATIONS IN THE MARKET:
✓ Augmentin, Co-amoxiclav: Amoxicillin + clavulanic acid
✓ Timentin: Ticarcillin + Clavulanic acid
✓ Tazocin, Piptaz, Zosyn: Piperacillin + Tazobactam
✓ Zerbaxa: ceftolozane + tazobactam
✓ Avycaz: Ceftazidime + avibactam
✓ Unasyn: ampicillin + sulbactam
o Cephalosphorins
▪ Old source: Cephalosporium acremonium
▪ Cephalosporin C – first cephalosporin
▪ New: Acremonium chrysogenum
▪ Classified into 5 GENERATIONS
▪ NUCLEUS: 7-aminocephalosporanic acid (7-ACA)
▪ STRUCTURE: B-lactam + dihydrothiazine ring (take note para dili malimtan:
Piattos + box + Sulfur na atom)
▪ Habang tumataas ang generation, lumalawak ang Gram (-) coverage nya,
nawawala naman ang positive
o Carbapenems
▪ For ESBL infection (extended spectrum beta lactamase
▪ Epileptogenic = most epitoleptic class (can cause seizures)
▪ Synthetic derivatives of the natural product Thienamycin (from
Streptomyces cattleya)
▪ THIENAMYCIN – unstable prototype
▪ EXAMPLES:
▪ IMIPENEM
• N-formimidoyl thienamycin
• Added with cilastatin (brand name: Thienam, PRIMAXIN) to
inhibit DHP-1
• Broadest of all beta lactams
• MOST EPILEPTOGENIC
▪ DORIPENEM
▪ MEROPENEM
• 2nd gen carbapenem
• DHP and B-lactamase resistant
• Therapeutically equivalent to imipenem
▪ ERTAPENEM
▪ With benzoic acid = high protein binding = inc half-life
▪ DOC for Extended-spectrum beta-lactamase-producing G (-) bacteria
▪ ONLY CARBAPENEM that has NO coverage for Pseudomonas
o Monobactams
▪ Works on Gram (-), Pseudomonas
▪ Only available in IV form; poorly absorbed orally
▪ Excreted in the urine
▪ EXAMPLES:
▪ Aztreonam
• From Chromobacterium violaceum
• Not orally active => parenteral
• For Gram (–) aerobes, including P. aeruginosa, nosocomial
infections
• Magic bullet for Pseudomonas
• Last line
o Vancomycin
o From Streptomyces orientalis/Amycolaptosis orientalis
o DOC for infection caused by MRSA (including pneumonia, bacteremia and
endocarditis)
o DOC for Pseudomonas colitis caused by oral form of Vancomycin
o Susceptible to penicillin
o Target trough: 15-20 ug/mL (if maglampas within these values =
NEPHROTOXIC)
o ADR: flushing (Red Man Syndrome); nephrotoxicity
• ADVERSE EFFECTS:
▪ Most OTOTOXIC (SA)– Streptomycin, Amikacin
▪ Most COCHLEOTOXIC (KAN) – Kanamycin > Amikacin =
Neomycin
▪ Most VESTIBULOTOXIC (SG) – Streptomycin >
Gentamicin
▪ Most NEPHROTOXIC (NTG) – Neomycin > Tobramycin =
Gentamicin
▪ Least ototoxic and nephrotoxic – Netilimicin
o Tetracyclines
• Reversible inhibitors (bacteriostatic) of protein synthesis
• Binds to rRNA at 16s of 30s subunit = inhibits binding of aminoacyl-tRNA
to the acceptor site on the mRNAribosome complex
• DOC for Rickettsia
• CHLORTETRACYCLINE: From Streptomyces aureofaciens -
OXYTETRACYCLINE: from S. rimosus
• BROADEST SPECTRUM but no spectrum for Pseudomonas
• STRUCTURE: 4 fused rings
• Side effects
▪ Permanent brown discoloration of tooth enamel via
calcium tetracycline precipitation
▪ Photosensitivity when patient is exposed to sunlight
(esp DEMECLOCYCLINE, DOXYCYCLINE)
▪ Fanconi-like syndrome: due to expired tetracycline
DoMino
VERY LONG-ACTING 36 hours Tigecycline - for MRSA and
Acinetobacter baumani
o Macrolides
• STRUCTURE: a large lactone ring
• Treatment for community-acquired pneumonia
• EXAMPLES (remember macroCARE)
▪ Clarithromycin
• More potent than erythromycin
• For ulcers caused by H. pylori
▪ Azithromycin
• once a day dosing
• Rapidly absorbed and well tolerated orally
• For nongonococcal urethritis (chlamydia, LRTI,
PID, pharyngitis, Legionaiire)
▪ Roxithromycin
• DOC for Legionaiire’s disease (Legionella
pneumophila)
• Potent CYP inhibitor
▪ Erythromycin
• From Streptomyces erythreus
• Former Ilotycin
• Alternative to penicillin if allergic ang px
o Chloramphenicol
• From Streptomyces venezuelae
• Reversible binding to 50s ribosomal subunit
• For typhoid fever (OLD DOC), Haemophilus, rickettsia
• Gray baby syndrome
• NEVER A DOC!!!
Quinolones/Fluoroquinolones
o Irreversible inhibitors of DNA Gyrase and Topoisomerase IV, which are involved
in DNA-dependent RNA polymerase activity
o Alters the conformation of the DNA via DNA supercoiling
o No supercoiling = no genetic information = no bacterial growth
o Habang gataas ang generation, gataas ang spectrum niya for Gram positive
bacteria